myRT

myRT report for GCA_001320605.1_ASM132060v1

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Seq: BCBJ01000081.1 Pseudomonas sp. NBRC 111133 DNA, contig: PPU20_CON02010, whole genome shotgun sequence (112739 bp)
Overview 1 RT 1: 87179-93407 bp Neighborhood of RT #1 [87179, 93424] SUA5 Smf RVT_N RVT-GII YkfC HNH def fmt Feature: gene Location: 87179-87736 bp Feature: domain Description: SUA5 Location: 87197-87734 bp Feature: domain Description: SUA5 Location: 871 97-87734 bp Feature: gene Location: 87779-88876 bp Feature: domain Description: Smf Location: 87815-88868 bp Feature: domain Description: Smf Location: 8781 5-88868 bp Feature: gene Location: 90112-91818 bp Feature: RT Description: RVT_N Location: 90169-90412 bp Feature: RT Description: RVT_N Location: 901 69-9041 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90457-91090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90457-91 090 bp Feature: domain Description: YkfC Location: 91291-91453 bp Feature: domain Description: YkfC Location: 91 291 -91 453 bp Feature: domain Description: HNH Note: nucleases Location: 91630-91768 bp Feature: domain Description: HNH Note: nucleases Location: 91 630-91 768 bp Feature: gene Location: 91926-92432 bp Feature: domain Description: def Location: 91929-92415 bp Feature: domain Description: def Location: 91 929-9241 5 bp Feature: gene Location: 92492-93424 bp Feature: domain Description: fmt Location: 92495-93407 bp Feature: domain Description: fmt Location: 92495-93407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUA5 (pfam03481), Smf (COG0758), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), def (PRK00150), fmt (TIGR00460)

Seq: BCBJ01000116.1 Pseudomonas sp. NBRC 111133 DNA, contig: PPU20_CON03510, whole genome shotgun sequence (52337 bp)
Overview 1 RT 1: 47436-50211 bp Neighborhood of RT #1 [47436, 50211] RVT-GII GIIM Feature: gene Location: 47436-47618 bp Feature: gene Location: 47766-47951 bp Feature: gene Location: 48086-49507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48443-49058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48443-49058 bp Feature: domain Description: GIIM Note: maturase Location: 49115-49340 bp Feature: domain Description: GIIM Note: maturase Location: 49115-49340 bp Feature: gene Location: 49658-49876 bp Feature: gene Location: 49909-50211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: BCBJ01000140.1 Pseudomonas sp. NBRC 111133 DNA, contig: PPU20_CON05510, whole genome shotgun sequence (15973 bp)
Overview 1 RT 1: 13537-15792 bp Neighborhood of RT #1 [13537, 15959] RDD RVT-GII GIIM Feature: gene Location: 13537-14061 bp Feature: domain Description: RDD Location: 13567-14032 bp Feature: domain Description: RDD Location: 13 567-1403 2 bp Feature: gene Location: 14080-14220 bp Feature: gene Location: 14568-15959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14895-15510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14895-15510 bp Feature: domain Description: GIIM Note: maturase Location: 15564-15792 bp Feature: domain Description: GIIM Note: maturase Location: 15564-15792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-GII, GIIM (pfam08388)

Seq: BCBJ01000172.1 Pseudomonas sp. NBRC 111133 DNA, contig: PPU20_CON90201, whole genome shotgun sequence (1360 bp)
Overview 1 RT 1: 115-1355 bp Neighborhood of RT #1 [115, 1357] RVT-GII Feature: gene Location: 115-594 bp Feature: gene Location: 530-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791-1355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII