myRT

myRT report for GCA_001320925.1_ASM132092v1

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Seq: BCBS01000018.1 Pseudomonas sp. NBRC 111142 DNA, contig: PPU32_CON00018, whole genome shotgun sequence (56377 bp)
Overview 1 RT 1: 29597-35823 bp Neighborhood of RT #1 [29597, 35840] PRK10634 Smf RVT_N RVT-GII YkfC HNH def fmt Feature: gene Location: 29597-30154 bp Feature: domain Description: PRK10634 Location: 29618-30152 bp Feature: domain Description: PRK1 0634 Location: 2961 8-301 52 bp Feature: gene Location: 30192-31400 bp Feature: domain Description: Smf Location: 30339-31389 bp Feature: domain Description: Smf Location: 30339-31 389 bp Feature: gene Location: 32527-34233 bp Feature: RT Description: RVT_N Location: 32584-32827 bp Feature: RT Description: RVT_N Location: 32584-32827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32872-33505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32872-33505 bp Feature: domain Description: YkfC Location: 33706-33868 bp Feature: domain Description: YkfC Location: 33706-33868 bp Feature: domain Description: HNH Note: nucleases Location: 34045-34183 bp Feature: domain Description: HNH Note: nucleases Location: 34045-341 83 bp Feature: gene Location: 34341-34847 bp Feature: domain Description: def Location: 34344-34830 bp Feature: domain Description: def Location: 34344-34830 bp Feature: gene Location: 34908-35840 bp Feature: domain Description: fmt Location: 34911-35823 bp Feature: domain Description: fmt Location: 3491 1 -35823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10634 (L-threonylcarbamoyladenylate synthase type 1 TsaC), Smf (COG0758), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), def (PRK00150), fmt (TIGR00460)

Seq: BCBS01000120.1 Pseudomonas sp. NBRC 111142 DNA, contig: PPU32_CON00120, whole genome shotgun sequence (18333 bp)
Overview 1 RT 1: 412-4530 bp Neighborhood of RT #1 [412, 4559] RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 412-585 bp Feature: gene Location: 605-2266 bp Feature: RT Description: RVT_N Location: 650-893 bp Feature: RT Description: RVT_N Location: 650-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 938-1574 bp Feature: domain Description: GIIM Note: maturase Location: 1631-1859 bp Feature: domain Description: GIIM Note: maturase Location: 1631-1859 bp Feature: gene Location: 2823-4160 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2964-3177 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 964-3177 bp Feature: domain Description: zf-IS66 Location: 3198-3324 bp Feature: domain Description: zf-IS66 Location: 3198-332 4 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3366-4140 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3366-4140 bp Feature: gene Location: 4224-4559 bp Feature: domain Description: TnpB_IS66 Location: 4242-4530 bp Feature: domain Description: TnpB_IS66 Location: 42 42 -4530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: BCBS01000149.1 Pseudomonas sp. NBRC 111142 DNA, contig: PPU32_CON00149, whole genome shotgun sequence (14714 bp)
Overview 1 RT 1: 4518-7942 bp Neighborhood of RT #1 [4518, 7942] RDD RVT-GII GIIM Feature: gene Location: 4518-5042 bp Feature: domain Description: RDD Location: 4548-5013 bp Feature: domain Description: RDD Location: 4548-5013 bp Feature: gene Location: 5198-5383 bp Feature: gene Location: 5549-6940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5876-6491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5876-6491 bp Feature: domain Description: GIIM Note: maturase Location: 6545-6773 bp Feature: domain Description: GIIM Note: maturase Location: 6545-6773 bp Feature: gene Location: 7061-7228 bp Feature: gene Location: 7625-7942 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-GII, GIIM (pfam08388)