myRT

myRT report for GCA_001320965.1_ASM132096v1

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Seq: BCBT01000024.1 Pseudomonas sp. NBRC 111143 DNA, contig: PPU34_CON00024, whole genome shotgun sequence (86904 bp)
Overview 1 RT 1: 82939-86847 bp Neighborhood of RT #1 [82939, 86903] PRK10634 Smf RVT_N RVT-GII Feature: gene Location: 82939-83496 bp Feature: domain Description: PRK10634 Location: 82960-83494 bp Feature: domain Description: PRK1 0634 Location: 82960-83494 bp Feature: gene Location: 83534-84742 bp Feature: domain Description: Smf Location: 83681-84731 bp Feature: domain Description: Smf Location: 83681 -84731 bp Feature: gene Location: 85869-86903 bp Feature: RT Description: RVT_N Location: 85926-86169 bp Feature: RT Description: RVT_N Location: 85926-861 69 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86214-86847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8621 4-86847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10634 (L-threonylcarbamoyladenylate synthase type 1 TsaC), Smf (COG0758), RVT_N (pfam13655), RVT-GII

Seq: BCBT01000029.1 Pseudomonas sp. NBRC 111143 DNA, contig: PPU34_CON00029, whole genome shotgun sequence (71747 bp)
Overview 1 RT 1: 7906-12314 bp Neighborhood of RT #1 [7906, 12314] Dam RVT-DGRs Avd_like Feature: gene Location: 7906-8070 bp Feature: gene Location: 8142-8966 bp Feature: domain Description: Dam Location: 8202-8952 bp Feature: domain Description: Dam Location: 82 02 -8952 bp Feature: gene Location: 9327-10358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9531-10209 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9531-102 09 bp Feature: gene Location: 10666-11079 bp Feature: domain Description: Avd_like Location: 10693-11041 bp Feature: domain Description: Avd_like Location: 10693-11041 bp Feature: gene Location: 11220-12314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), Dam (pfam05869), RVT-DGRs

Seq: BCBT01000033.1 Pseudomonas sp. NBRC 111143 DNA, contig: PPU34_CON00033, whole genome shotgun sequence (65152 bp)
Overview 1 RT 1: 39543-42967 bp Neighborhood of RT #1 [39543, 42967] RDD RVT-GII GIIM Feature: gene Location: 39543-40067 bp Feature: domain Description: RDD Location: 39573-40038 bp Feature: domain Description: RDD Location: 3 9573 -4003 8 bp Feature: gene Location: 40223-40408 bp Feature: gene Location: 40574-41965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40901-41516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40901-41516 bp Feature: domain Description: GIIM Note: maturase Location: 41570-41798 bp Feature: domain Description: GIIM Note: maturase Location: 41570-41798 bp Feature: gene Location: 42086-42253 bp Feature: gene Location: 42650-42967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RDD (pfam06271), RVT-GII, GIIM (pfam08388)

Seq: BCBT01000059.1 Pseudomonas sp. NBRC 111143 DNA, contig: PPU34_CON00059, whole genome shotgun sequence (41041 bp)
Overview 1 RT 1: 36398-40880 bp Neighborhood of RT #1 [36398, 40880] FGE-sulfatase Avd_like RVT-DGRs Dam Feature: gene Location: 36398-37504 bp Feature: domain Description: FGE-sulfatase Location: 36719-36983 bp Feature: domain Description: FGE-sulfatase Location: 36719-36983 bp Feature: gene Location: 37667-38062 bp Feature: domain Description: Avd_like Location: 37694-38042 bp Feature: domain Description: Avd_like Location: 37694 -3804 2 bp Feature: gene Location: 38370-39407 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38574-39261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38574 -39261 bp Feature: gene Location: 39722-40564 bp Feature: domain Description: Dam Location: 39776-40484 bp Feature: domain Description: Dam Location: 39776-4 04 84 bp Feature: gene Location: 40623-40880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, Dam (pfam05869)

Seq: BCBT01000064.1 Pseudomonas sp. NBRC 111143 DNA, contig: PPU34_CON00064, whole genome shotgun sequence (36810 bp)
Overview 1 RT 1: 17573-20713 bp Neighborhood of RT #1 [17573, 20713] RVT-GII GIIM Feature: gene Location: 17573-17701 bp Feature: gene Location: 17938-18276 bp Feature: gene Location: 18642-20063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18999-19614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18999-19614 bp Feature: domain Description: GIIM Note: maturase Location: 19671-19896 bp Feature: domain Description: GIIM Note: maturase Location: 19671-19896 bp Feature: gene Location: 20198-20383 bp Feature: gene Location: 20531-20713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)