myRT

myRT report for GCA_001334015.1_5737_8_2

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Seq: CFMJ01000006.1 Streptococcus pneumoniae genome assembly 5737_8#2, scaffold ERS096023SCcontig000006, whole genome shotgun sequence (85535 bp)
Overview 1 RT 1: 34557-40542 bp Neighborhood of RT #1 [34557, 40553] DUF2969 rpsA RVT-GII GIIM Gsh2 PRK09225 Feature: gene Location: 34557-34787 bp Ori: CFC59361.1 Feature: domain Description: DUF2969 Location: 34560-34779 bp Feature: domain Description: DUF2969 Location: 34560-34779 bp Feature: gene Location: 35326-36528 bp Ori: CFC59368.1 Gene: rpsA Feature: domain Description: rpsA Location: 35329-36517 bp Feature: domain Description: rpsA Location: 35329-3651 7 bp Feature: gene Location: 36705-37274 bp Ori: CFC59372.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36708-36915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36708-3691 5 bp Feature: domain Description: GIIM Note: maturase Location: 36969-37182 bp Feature: domain Description: GIIM Note: maturase Location: 36969-371 82 bp Feature: gene Location: 37716-38993 bp Ori: CFC59377.1 Feature: domain Description: Gsh2 Location: 37722-38988 bp Feature: domain Description: Gsh2 Location: 37722-38988 bp Feature: gene Location: 39069-40553 bp Ori: CFC59380.1 Gene: thrC Feature: domain Description: PRK09225 Location: 39084-40542 bp Feature: domain Description: PRK09225 Location: 39084-40542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2969 (pfam11184), rpsA (TIGR00717), RVT-GII, GIIM (pfam08388), Gsh2 (COG3572), PRK09225 (threonine synthase; Validated)

Seq: CFMJ01000017.1 Streptococcus pneumoniae genome assembly 5737_8#2, scaffold ERS096023SCcontig000017, whole genome shotgun sequence (46298 bp)
Overview 1 RT 1: 42580-45402 bp Neighborhood of RT #1 [42580, 45572] RVT-GII cas_Csn1 Feature: gene Location: 42580-42744 bp Feature: gene Location: 42746-43354 bp Feature: gene Location: 43650-45572 bp Ori: CFC61847.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43977-44712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43977-44712 bp Feature: domain Description: cas_Csn1 Location: 45123-45402 bp Feature: domain Description: cas_Csn1 Location: 4512 3-45402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, cas_Csn1 (TIGR01865)

Seq: CFMJ01000053.1 Streptococcus pneumoniae genome assembly 5737_8#2, scaffold ERS096023SCcontig000053, whole genome shotgun sequence (5923 bp)
Overview 1 RT 1: 320-3723 bp Neighborhood of RT #1 [320, 3725] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 320-1498 bp Ori: CFC64594.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524-1139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524-113 9 bp Feature: domain Description: GIIM Note: maturase Location: 1193-1406 bp Feature: domain Description: GIIM Note: maturase Location: 1193 -1406 bp Feature: gene Location: 1664-2146 bp Ori: CFC64599.1 Gene: luxS Feature: domain Description: LuxS Location: 1682-2141 bp Feature: domain Description: LuxS Location: 1682-2141 bp Feature: gene Location: 2241-3725 bp Ori: CFC64603.1 Feature: domain Description: COG4868 Location: 2247-3723 bp Feature: domain Description: COG4868 Location: 2247-3 723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )