myRT

myRT report for GCA_001334175.1_5750_2_8

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Seq: CHWI01000012.1 Streptococcus pneumoniae genome assembly 5750_2#8, scaffold ERS096041SCcontig000012, whole genome shotgun sequence (47984 bp)
Overview 1 RT 1: 14743-21834 bp Neighborhood of RT #1 [14743, 21834] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 Feature: gene Location: 14743-15333 bp Feature: domain Description: COG5340 Location: 14746-15178 bp Feature: domain Description: COG5340 Location: 1 4746-1 51 78 bp Feature: gene Location: 15330-16175 bp Feature: domain Description: AbiEii Location: 15429-16128 bp Feature: domain Description: AbiEii Location: 1 5429-1 61 28 bp Feature: gene Location: 16525-18447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16852-17587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6852-1 7587 bp Feature: domain Description: cas_Csn1 Location: 17998-18277 bp Feature: domain Description: cas_Csn1 Location: 1 7998-1 8277 bp Feature: gene Location: 19156-20988 bp Feature: domain Description: Peptidase_M23 Location: 19756-19960 bp Feature: domain Description: Peptidase_M23 Location: 1 9756-1 9960 bp Feature: domain Description: Phage_lysozyme2 Location: 20113-20623 bp Feature: domain Description: Phage_lysozyme2 Location: 201 1 3-20623 bp Feature: domain Description: COG3942 Location: 20698-20971 bp Feature: domain Description: COG3942 Location: 20698-20971 bp Feature: gene Location: 21004-21834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen )