myRT

myRT report for GCA_001334995.1_6631_5_20

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Seq: CHNX01000082.1 Streptococcus pneumoniae genome assembly 6631_5#20, scaffold ERS019634SCcontig000082, whole genome shotgun sequence (5464 bp)
Overview 1 RT 1: 108-3262 bp Neighborhood of RT #1 [108, 3264] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 108-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114-678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4-678 bp Feature: domain Description: GIIM Note: maturase Location: 732-945 bp Feature: domain Description: GIIM Note: maturase Location: 732-945 bp Feature: gene Location: 1203-1685 bp Feature: domain Description: LuxS Location: 1221-1680 bp Feature: domain Description: LuxS Location: 1 221 -1 680 bp Feature: gene Location: 1780-3264 bp Feature: domain Description: COG4868 Location: 1786-3262 bp Feature: domain Description: COG4868 Location: 1 786-3262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )

Seq: CHNX01000001.1 Streptococcus pneumoniae genome assembly 6631_5#20, scaffold ERS019634SCcontig000001, whole genome shotgun sequence (84314 bp)
Overview 1 RT 1: 20619-29903 bp Neighborhood of RT #1 [20619, 30058] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 20619-22970 bp Feature: domain Description: TraC-F-type Location: 21405-22788 bp Feature: domain Description: TraC-F-type Location: 2 1405-2 2 788 bp Feature: gene Location: 22967-25645 bp Feature: domain Description: Peptidase_M23 Location: 24413-24617 bp Feature: domain Description: Peptidase_M2 3 Location: 2 4413-2 4617 bp Feature: domain Description: Phage_lysozyme2 Location: 24770-25277 bp Feature: domain Description: Phage_lysozyme2 Location: 2 4770-2 52 77 bp Feature: domain Description: COG3942 Location: 25397-25628 bp Feature: domain Description: COG3942 Location: 2 5397-2 562 8 bp Feature: gene Location: 26354-28276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26681-27416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6681-2 7416 bp Feature: domain Description: cas_Csn1 Location: 27827-28106 bp Feature: domain Description: cas_Csn1 Location: 2 782 7-2 8106 bp Feature: gene Location: 28626-29471 bp Feature: domain Description: AbiEii Location: 28725-29424 bp Feature: domain Description: AbiEii Location: 2 872 5-2 942 4 bp Feature: gene Location: 29468-30058 bp Feature: domain Description: COG5340 Location: 29471-29903 bp Feature: domain Description: COG5340 Location: 2 9471-2 9903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )