myRT

myRT report for GCA_001336815.1_6259_7_3

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Seq: CFFA01000018.1 Streptococcus pneumoniae genome assembly 6259_7#3, scaffold ERS019209SCcontig000018, whole genome shotgun sequence (42724 bp)
Overview 1 RT 1: 7416-15329 bp Neighborhood of RT #1 [7416, 15334] GlpF RVT-GII GIIM MFS_MefA_like PRK04813 Feature: gene Location: 7416-8120 bp Feature: domain Description: GlpF Location: 7419-8115 bp Feature: domain Description: GlpF Location: 741 9-81 1 5 bp Feature: gene Location: 8707-9366 bp Feature: gene Location: 10403-11680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10607-11222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0607-1 1 222 bp Feature: domain Description: GIIM Note: maturase Location: 11276-11489 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 276-1 1 489 bp Feature: gene Location: 12140-13318 bp Feature: domain Description: MFS_MefA_like Location: 12155-13298 bp Feature: domain Description: MFS_MefA_like Location: 1 21 55-1 3298 bp Feature: gene Location: 13784-15334 bp Feature: domain Description: PRK04813 Location: 13802-15329 bp Feature: domain Description: PRK0481 3 Location: 1 3802-1 5329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173), PRK04813 (D-alanine--poly(phosphoribitol) ligase subunit DltA)

Seq: CFFA01000011.1 Streptococcus pneumoniae genome assembly 6259_7#3, scaffold ERS019209SCcontig000011, whole genome shotgun sequence (55355 bp)
Overview 1 RT 1: 32244-41528 bp Neighborhood of RT #1 [32244, 41683] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 32244-34595 bp Feature: domain Description: TraC-F-type Location: 33030-34413 bp Feature: domain Description: TraC-F-type Location: 33030-34413 bp Feature: gene Location: 34592-37270 bp Feature: domain Description: Peptidase_M23 Location: 36038-36242 bp Feature: domain Description: Peptidase_M2 3 Location: 36038-362 42 bp Feature: domain Description: Phage_lysozyme2 Location: 36395-36902 bp Feature: domain Description: Phage_lysozyme2 Location: 36395-36902 bp Feature: domain Description: COG3942 Location: 37022-37253 bp Feature: domain Description: COG3942 Location: 3702 2 -372 53 bp Feature: gene Location: 37979-39901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38306-39041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38306-39041 bp Feature: domain Description: cas_Csn1 Location: 39452-39731 bp Feature: domain Description: cas_Csn1 Location: 39452 -39731 bp Feature: gene Location: 40251-41096 bp Feature: domain Description: AbiEii Location: 40350-41049 bp Feature: domain Description: AbiEii Location: 40350-41049 bp Feature: gene Location: 41093-41683 bp Feature: domain Description: COG5340 Location: 41096-41528 bp Feature: domain Description: COG5340 Location: 41096-4152 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )