myRT

myRT report for GCA_001340095.1_6730_1_18

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Seq: CFFH01000022.1 Streptococcus pneumoniae genome assembly 6730_1#18, scaffold ERS020104SCcontig000022, whole genome shotgun sequence (36680 bp)
Overview 1 RT 1: 13670-20701 bp Neighborhood of RT #1 [13670, 20718] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 Feature: gene Location: 13670-14260 bp Feature: domain Description: COG5340 Location: 13673-14105 bp Feature: domain Description: COG5340 Location: 1 3673-1 41 05 bp Feature: gene Location: 14257-15102 bp Feature: domain Description: AbiEii Location: 14356-15055 bp Feature: domain Description: AbiEii Location: 1 4356-1 5055 bp Feature: gene Location: 15452-17005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15455-16145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5455-1 61 45 bp Feature: domain Description: KOG4768 Location: 16292-16397 bp Feature: domain Description: KOG4768 Location: 1 6292-1 6397 bp Feature: domain Description: cas_Csn1 Location: 16556-16835 bp Feature: domain Description: cas_Csn1 Location: 1 6556-1 6835 bp Feature: gene Location: 17158-17331 bp Feature: gene Location: 18040-20718 bp Feature: domain Description: Peptidase_M23 Location: 19486-19690 bp Feature: domain Description: Peptidase_M23 Location: 1 9486-1 9690 bp Feature: domain Description: Phage_lysozyme2 Location: 19843-20350 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9843-20350 bp Feature: domain Description: COG3942 Location: 20470-20701 bp Feature: domain Description: COG3942 Location: 20470-20701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen )

Seq: CFFH01000001.1 Streptococcus pneumoniae genome assembly 6730_1#18, scaffold ERS020104SCcontig000001, whole genome shotgun sequence (192645 bp)
Overview 1 RT 1: 185178-190434 bp Neighborhood of RT #1 [185178, 190436] antibiot_sagB RVT-GII GIIM LuxS COG4868 Feature: gene Location: 185178-185948 bp Feature: domain Description: antibiot_sagB Location: 185436-185925 bp Feature: domain Description: antibiot_sagB Location: 185436-18592 5 bp Feature: gene Location: 185968-186132 bp Feature: gene Location: 187031-188209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 187235-187850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1872 35-187850 bp Feature: domain Description: GIIM Note: maturase Location: 187904-188117 bp Feature: domain Description: GIIM Note: maturase Location: 187904-188117 bp Feature: gene Location: 188375-188857 bp Feature: domain Description: LuxS Location: 188393-188852 bp Feature: domain Description: LuxS Location: 188393-188852 bp Feature: gene Location: 188952-190436 bp Feature: domain Description: COG4868 Location: 188958-190434 bp Feature: domain Description: COG4868 Location: 188958-190434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antibiot_sagB (TIGR03605), RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )