myRT

myRT report for GCA_001340675.1_6736_6_4

Download annotations/find similar RTs

Seq: CHTK01000012.1 Streptococcus pneumoniae genome assembly 6736_6#4, scaffold ERS020762SCcontig000012, whole genome shotgun sequence (61819 bp)
Overview 1 RT 1: 46692-54606 bp Neighborhood of RT #1 [46692, 54611] PRK04813 MFS_MefA_like RVT-GII GIIM GlpF Feature: gene Location: 46692-48242 bp Feature: domain Description: PRK04813 Location: 46710-48237 bp Feature: domain Description: PRK0481 3 Location: 4671 0-48237 bp Feature: gene Location: 48708-49886 bp Feature: domain Description: MFS_MefA_like Location: 48723-49866 bp Feature: domain Description: MFS_MefA_like Location: 48723-49866 bp Feature: gene Location: 50346-51623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50550-51165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50550-51 1 65 bp Feature: domain Description: GIIM Note: maturase Location: 51219-51432 bp Feature: domain Description: GIIM Note: maturase Location: 51 21 9-51 432 bp Feature: gene Location: 52661-53320 bp Feature: gene Location: 53907-54611 bp Feature: domain Description: GlpF Location: 53910-54606 bp Feature: domain Description: GlpF Location: 5391 0-54606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04813 (D-alanine--poly(phosphoribitol) ligase subunit DltA), MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388), GlpF (COG0580)

Seq: CHTK01000003.1 Streptococcus pneumoniae genome assembly 6736_6#4, scaffold ERS020762SCcontig000003, whole genome shotgun sequence (113628 bp)
Overview 1 RT 1: 38597-47881 bp Neighborhood of RT #1 [38597, 48036] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII KOG4768 cas_Csn1 AbiEii COG5340 Feature: gene Location: 38597-40948 bp Feature: domain Description: TraC-F-type Location: 39383-40766 bp Feature: domain Description: TraC-F-type Location: 39383-40766 bp Feature: gene Location: 40945-43623 bp Feature: domain Description: Peptidase_M23 Location: 42391-42595 bp Feature: domain Description: Peptidase_M2 3 Location: 42 391-42 595 bp Feature: domain Description: Phage_lysozyme2 Location: 42748-43258 bp Feature: domain Description: Phage_lysozyme2 Location: 42 748-432 58 bp Feature: domain Description: COG3942 Location: 43333-43606 bp Feature: domain Description: COG3942 Location: 43333-43606 bp Feature: gene Location: 44332-46254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44659-45394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44659-45394 bp Feature: domain Description: KOG4768 Location: 45541-45646 bp Feature: domain Description: KOG4768 Location: 45541-45646 bp Feature: domain Description: cas_Csn1 Location: 45802-46084 bp Feature: domain Description: cas_Csn1 Location: 45802 -46084 bp Feature: gene Location: 46604-47449 bp Feature: domain Description: AbiEii Location: 46703-47402 bp Feature: domain Description: AbiEii Location: 46703-47402 bp Feature: gene Location: 47446-48036 bp Feature: domain Description: COG5340 Location: 47449-47881 bp Feature: domain Description: COG5340 Location: 47449-47881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )