myRT

myRT report for GCA_001344375.1_6871_1_2

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Seq: CGYU01000001.1 Streptococcus pneumoniae genome assembly 6871_1#2, scaffold ERS021288SCcontig000001, whole genome shotgun sequence (194574 bp)
Overview 1 RT 1: 50515-58510 bp Neighborhood of RT #1 [50515, 58527] EriC TrkA_C xerS RVT-GII GIIM lipoyltrans AceF lipoamide_DH Feature: gene Location: 50515-52065 bp Feature: domain Description: EriC Location: 50608-51820 bp Feature: domain Description: EriC Location: 50608-51 820 bp Feature: domain Description: TrkA_C Location: 51865-52060 bp Feature: domain Description: TrkA_C Location: 51 865-52060 bp Feature: gene Location: 52649-53719 bp Feature: domain Description: xerS Location: 52652-53717 bp Feature: domain Description: xerS Location: 52652-5371 7 bp Feature: gene Location: 54421-55599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54625-55240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54625-55240 bp Feature: domain Description: GIIM Note: maturase Location: 55294-55507 bp Feature: domain Description: GIIM Note: maturase Location: 55294-55507 bp Feature: gene Location: 55764-56753 bp Feature: domain Description: lipoyltrans Location: 55776-56724 bp Feature: domain Description: lipoyltrans Location: 55776-56724 bp Feature: gene Location: 56824-58527 bp Feature: domain Description: AceF Location: 56827-57124 bp Feature: domain Description: AceF Location: 56827-571 24 bp Feature: domain Description: lipoamide_DH Location: 57160-58510 bp Feature: domain Description: lipoamide_DH Location: 571 60-5851 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), lipoyltrans (TIGR00545), AceF (COG0508), lipoamide_DH (TIGR01350)

Seq: CGYU01000009.1 Streptococcus pneumoniae genome assembly 6871_1#2, scaffold ERS021288SCcontig000009, whole genome shotgun sequence (76816 bp)
Overview 1 RT 1: 16889-26146 bp Neighborhood of RT #1 [16889, 26328] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 16889-17479 bp Feature: domain Description: COG5340 Location: 16892-17324 bp Feature: domain Description: COG5340 Location: 16892 -1732 4 bp Feature: gene Location: 17476-18321 bp Feature: domain Description: AbiEii Location: 17575-18274 bp Feature: domain Description: AbiEii Location: 17575-182 74 bp Feature: gene Location: 18671-20593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18998-19733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18998-19733 bp Feature: domain Description: cas_Csn1 Location: 20144-20423 bp Feature: domain Description: cas_Csn1 Location: 2 0144-2 042 3 bp Feature: gene Location: 21302-23980 bp Feature: domain Description: Peptidase_M23 Location: 22748-22952 bp Feature: domain Description: Peptidase_M2 3 Location: 2 2 748-2 2 952 bp Feature: domain Description: Phage_lysozyme2 Location: 23105-23612 bp Feature: domain Description: Phage_lysozyme2 Location: 2 3105-2 3612 bp Feature: domain Description: COG3942 Location: 23732-23963 bp Feature: domain Description: COG3942 Location: 2 3732 -2 3963 bp Feature: gene Location: 23977-26328 bp Feature: domain Description: TraC-F-type Location: 24763-26146 bp Feature: domain Description: TraC-F-type Location: 2 4763-2 6146 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)