myRT

myRT report for GCA_001346515.1_6949_1_24

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Seq: CFBJ01000023.1 Streptococcus pneumoniae genome assembly 6949_1#24, scaffold ERS021934SCcontig000023, whole genome shotgun sequence (33641 bp)
Overview 1 RT 1: 727-4276 bp Neighborhood of RT #1 [727, 4431] RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 727-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 054-1 789 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: gene Location: 2999-3844 bp Feature: domain Description: AbiEii Location: 3098-3797 bp Feature: domain Description: AbiEii Location: 3098-3797 bp Feature: gene Location: 3841-4431 bp Feature: domain Description: COG5340 Location: 3844-4276 bp Feature: domain Description: COG5340 Location: 3844-4276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII, cas_Csn1 (TIGR01865)

Seq: CFBJ01000026.1 Streptococcus pneumoniae genome assembly 6949_1#24, scaffold ERS021934SCcontig000026, whole genome shotgun sequence (30887 bp)
Overview 1 RT 1: 21368-28677 bp Neighborhood of RT #1 [21368, 28679] EriC TrkA_C xerS RVT-GII GIIM LuxS COG4868 Feature: gene Location: 21368-22918 bp Feature: domain Description: EriC Location: 21461-22673 bp Feature: domain Description: EriC Location: 2 1461-2 2 673 bp Feature: domain Description: TrkA_C Location: 22718-22913 bp Feature: domain Description: TrkA_C Location: 2 2 718-2 2 913 bp Feature: gene Location: 23502-24572 bp Feature: domain Description: xerS Location: 23505-24570 bp Feature: domain Description: xerS Location: 2 3505-2 4570 bp Feature: gene Location: 25274-26452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25478-26093 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5478-2 6093 bp Feature: domain Description: GIIM Note: maturase Location: 26147-26360 bp Feature: domain Description: GIIM Note: maturase Location: 2 6147-2 6360 bp Feature: gene Location: 26618-27100 bp Feature: domain Description: LuxS Location: 26636-27095 bp Feature: domain Description: LuxS Location: 2 6636-2 7095 bp Feature: gene Location: 27195-28679 bp Feature: domain Description: COG4868 Location: 27201-28677 bp Feature: domain Description: COG4868 Location: 2 72 01-2 8677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )