myRT

myRT report for GCA_001347395.1_7004_7_67

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Seq: CGZW01000042.1 Streptococcus pneumoniae genome assembly 7004_7#67, scaffold ERS022409SCcontig000042, whole genome shotgun sequence (6055 bp)
Overview 1 RT 1: 449-3852 bp Neighborhood of RT #1 [449, 3854] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 449-1627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-1268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653-1 268 bp Feature: domain Description: GIIM Note: maturase Location: 1322-1535 bp Feature: domain Description: GIIM Note: maturase Location: 1 322-1 535 bp Feature: gene Location: 1793-2275 bp Feature: domain Description: LuxS Location: 1811-2270 bp Feature: domain Description: LuxS Location: 1 81 1 -2270 bp Feature: gene Location: 2370-3854 bp Feature: domain Description: COG4868 Location: 2376-3852 bp Feature: domain Description: COG4868 Location: 2376-3852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family ), RVT-GII, GIIM (pfam08388)

Seq: CGZW01000011.1 Streptococcus pneumoniae genome assembly 7004_7#67, scaffold ERS022409SCcontig000011, whole genome shotgun sequence (63468 bp)
Overview 1 RT 1: 13671-22928 bp Neighborhood of RT #1 [13671, 23110] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 13671-14261 bp Feature: domain Description: COG5340 Location: 13674-14106 bp Feature: domain Description: COG5340 Location: 13674-14106 bp Feature: gene Location: 14258-15103 bp Feature: domain Description: AbiEii Location: 14357-15056 bp Feature: domain Description: AbiEii Location: 14357-15056 bp Feature: gene Location: 15453-17375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15780-16515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15780-16515 bp Feature: domain Description: cas_Csn1 Location: 16926-17205 bp Feature: domain Description: cas_Csn1 Location: 1692 6-172 05 bp Feature: gene Location: 18084-20762 bp Feature: domain Description: Peptidase_M23 Location: 19530-19734 bp Feature: domain Description: Peptidase_M2 3 Location: 19530-19734 bp Feature: domain Description: Phage_lysozyme2 Location: 19887-20394 bp Feature: domain Description: Phage_lysozyme2 Location: 19887-2 0394 bp Feature: domain Description: COG3942 Location: 20514-20745 bp Feature: domain Description: COG3942 Location: 2 0514-2 0745 bp Feature: gene Location: 20759-23110 bp Feature: domain Description: TraC-F-type Location: 21545-22928 bp Feature: domain Description: TraC-F-type Location: 2 1545-2 2 92 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)