myRT

myRT report for GCA_001360975.1_10060_5_92

Download annotations/find similar RTs

Seq: CGJY01000003.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10060_5#92, scaffold ERS223318SCcontig000003, whole genome shotgun sequence (295968 bp)
Overview 1 RT 1: 252522-257788 bp Neighborhood of RT #1 [252522, 257811] PRK09678 RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 252522-252740 bp Ori: CGH98187.1 Gene: ogr Feature: domain Description: PRK09678 Location: 252525-252723 bp Feature: domain Description: PRK09678 Location: 252525-252723 bp Feature: gene Location: 253002-253181 bp Feature: gene Location: 253144-253917 bp Ori: CGH98280.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 253279-253732 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 253279-253732 bp Feature: gene Location: 254460-255650 bp Ori: CGH98331.1 Gene: prsE_1 Feature: domain Description: type_I_hlyD Location: 254541-254985 bp Feature: domain Description: type_I_hlyD Location: 254541 -254985 bp Feature: domain Description: type_I_hlyD Location: 255024-255648 bp Feature: domain Description: type_I_hlyD Location: 255024-255648 bp Feature: gene Location: 255655-257811 bp Ori: CGH98349.1 Gene: apxIB_1 Feature: domain Description: type_I_sec_LssB Location: 255715-257788 bp Feature: domain Description: type_I_sec_LssB Location: 25571 5-257788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)

Seq: CGJY01000022.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10060_5#92, scaffold ERS223318SCcontig000022, whole genome shotgun sequence (86102 bp)
Overview 1 RT 1: 61647-69745 bp Neighborhood of RT #1 [61647, 69801] Lon_rel_chp COG3547 RVT-GII GIIM DDE_Tnp_Tn3 Rve Feature: gene Location: 61647-63737 bp Ori: CGJ29453.1 Gene: lon_2 Feature: domain Description: Lon_rel_chp Location: 61719-63735 bp Feature: domain Description: Lon_rel_chp Location: 61719-63735 bp Feature: gene Location: 64140-65216 bp Ori: CGJ29471.1 Feature: domain Description: COG3547 Location: 64179-65100 bp Feature: domain Description: COG3547 Location: 64179-65100 bp Feature: gene Location: 65758-67281 bp Ori: CGJ29486.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66031-66763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66031-66763 bp Feature: domain Description: GIIM Note: maturase Location: 66838-67036 bp Feature: domain Description: GIIM Note: maturase Location: 66838-67036 bp Feature: gene Location: 68218-69072 bp Ori: CGJ29503.1 Gene: tnpA_5 Feature: domain Description: DDE_Tnp_Tn3 Location: 68254-69004 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 682 54-69004 bp Feature: gene Location: 69097-69801 bp Ori: CGJ29515.1 Gene: tnpA_6 Feature: domain Description: Rve Location: 69100-69745 bp Feature: domain Description: Rve Location: 69100-69745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lon_rel_chp (TIGR02653), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), Rve (COG3316)