myRT

myRT report for GCA_001360995.1_10071_3_1

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Seq: CGKN01000024.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10071_3#1, scaffold ERS223321SCcontig000024, whole genome shotgun sequence (68281 bp)
Overview 1 RT 1: 61647-67036 bp Neighborhood of RT #1 [61647, 67281] Lon_rel_chp COG3547 RVT-GII GIIM Feature: gene Location: 61647-63737 bp Ori: CGN50364.1 Gene: lon_1 Feature: domain Description: Lon_rel_chp Location: 61719-63735 bp Feature: domain Description: Lon_rel_chp Location: 61 71 9-63735 bp Feature: gene Location: 64140-65216 bp Ori: CGN50398.1 Feature: domain Description: COG3547 Location: 64179-65100 bp Feature: domain Description: COG3547 Location: 641 79-651 00 bp Feature: gene Location: 65758-67281 bp Ori: CGN50432.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66031-66763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66031 -66763 bp Feature: domain Description: GIIM Note: maturase Location: 66838-67036 bp Feature: domain Description: GIIM Note: maturase Location: 66838-67036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lon_rel_chp (TIGR02653), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CGKN01000003.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10071_3#1, scaffold ERS223321SCcontig000003, whole genome shotgun sequence (295992 bp)
Overview 1 RT 1: 38161-43433 bp Neighborhood of RT #1 [38161, 43450] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 PRK09678 Feature: gene Location: 38161-40317 bp Ori: CGM00851.1 Gene: apxIB_1 Feature: domain Description: type_I_sec_LssB Location: 38221-40294 bp Feature: domain Description: type_I_sec_LssB Location: 382 2 1-402 94 bp Feature: gene Location: 40322-41512 bp Ori: CGM00904.1 Gene: prsE_1 Feature: domain Description: type_I_hlyD Location: 40403-40847 bp Feature: domain Description: type_I_hlyD Location: 40403-40847 bp Feature: domain Description: type_I_hlyD Location: 40886-41510 bp Feature: domain Description: type_I_hlyD Location: 40886-41510 bp Feature: gene Location: 42055-42828 bp Ori: CGM00942.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42190-42643 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42 190-42 643 bp Feature: gene Location: 42791-42970 bp Feature: gene Location: 43232-43450 bp Ori: CGM00991.1 Gene: ogr Feature: domain Description: PRK09678 Location: 43235-43433 bp Feature: domain Description: PRK09678 Location: 432 35-43433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)