myRT

myRT report for GCA_001364255.1_10607_1_51

Download annotations/find similar RTs

Seq: CGPQ01000002.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10607_1#51, scaffold ERS327451SCcontig000002, whole genome shotgun sequence (519497 bp)
Overview 1 RT 1: 230872-238603 bp Neighborhood of RT #1 [230872, 239337] umuC PRK10276 RVT-GII zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 COG0610 Feature: gene Location: 230872-232143 bp Ori: CHR88965.1 Gene: umuC_2 Feature: domain Description: umuC Location: 230875-232141 bp Feature: domain Description: umuC Location: 230875-2321 41 bp Feature: gene Location: 232146-232661 bp Ori: CHR88997.1 Gene: umuD_2 Feature: domain Description: PRK10276 Location: 232272-232641 bp Feature: domain Description: PRK1 0276 Location: 232272-232641 bp Feature: gene Location: 233063-234550 bp Ori: CHR89032.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233468-234158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233468-2341 58 bp Feature: gene Location: 234807-236075 bp Ori: CHR89064.1 Feature: domain Description: zf-ISL3 Location: 234906-235038 bp Feature: domain Description: zf-ISL3 Location: 234906-235038 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 235059-235203 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 235059-235203 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 235251-235935 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 235251 -235935 bp Feature: gene Location: 236080-239337 bp Ori: CHR89109.1 Gene: hsdR_1 Feature: domain Description: COG0610 Location: 236101-238603 bp Feature: domain Description: COG061 0 Location: 2361 01 -238603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: CGPQ01000025.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10607_1#51, scaffold ERS327451SCcontig000025, whole genome shotgun sequence (43335 bp)
Overview 1 RT 1: 364-5150 bp Neighborhood of RT #1 [364, 5173] RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 364-537 bp Feature: gene Location: 506-1279 bp Ori: CHT43517.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 641-1094 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 641-1094 bp Feature: gene Location: 1822-3012 bp Ori: CHT43560.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 1903-2347 bp Feature: domain Description: type_I_hlyD Location: 1903-2 347 bp Feature: domain Description: type_I_hlyD Location: 2386-3010 bp Feature: domain Description: type_I_hlyD Location: 2 386-3010 bp Feature: gene Location: 3017-5173 bp Ori: CHT43597.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 3077-5150 bp Feature: domain Description: type_I_sec_LssB Location: 3077-5150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)