myRT

myRT report for GCA_001365075.1_10561_2_77

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Seq: CVGF01000006.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10561_2#77, scaffold ERS325307SCcontig000006, whole genome shotgun sequence (225458 bp)
Overview 1 RT 1: 75256-81837 bp Neighborhood of RT #1 [75256, 81866] PRK09692 PEP_TPR_lipo ANAPC3 TPR_2 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 75256-76446 bp Ori: CRB27422.1 Gene: intS_3 Feature: domain Description: PRK09692 Location: 75265-76417 bp Feature: domain Description: PRK09692 Location: 75265-7641 7 bp Feature: gene Location: 76880-77923 bp Ori: CRB27462.1 Feature: domain Description: PEP_TPR_lipo Location: 77030-77147 bp Feature: domain Description: PEP_TPR_lipo Location: 77030-771 47 bp Feature: domain Description: ANAPC3 Location: 77267-77408 bp Feature: domain Description: ANAPC3 Location: 77267-77408 bp Feature: domain Description: TPR_2 Location: 77429-77501 bp Feature: domain Description: TPR_2 Location: 77429-77501 bp Feature: gene Location: 78366-79598 bp Ori: CRB27495.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78567-79221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78567-79221 bp Feature: domain Description: GIIM Note: maturase Location: 79299-79521 bp Feature: domain Description: GIIM Note: maturase Location: 79299-79521 bp Feature: gene Location: 80060-81499 bp Ori: CRB27563.1 Feature: domain Description: LZ_Tnp_IS66 Location: 80198-80423 bp Feature: domain Description: LZ_Tnp_IS66 Location: 801 98-80423 bp Feature: domain Description: zf-IS66 Location: 80444-80576 bp Feature: domain Description: zf-IS66 Location: 80444-80576 bp Feature: domain Description: DDE_Tnp_IS66 Location: 80621-81458 bp Feature: domain Description: DDE_Tnp_IS66 Location: 80621 -81 458 bp Feature: gene Location: 81519-81866 bp Ori: CRB27584.1 Feature: domain Description: TnpB_IS66 Location: 81546-81837 bp Feature: domain Description: TnpB_IS66 Location: 81 546-81 837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), PEP_TPR_lipo (TIGR02917), ANAPC3 (pfam12895), TPR_2 (pfam07719), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: CVGF01000030.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10561_2#77, scaffold ERS325307SCcontig000030, whole genome shotgun sequence (43292 bp)
Overview 1 RT 1: 38118-42927 bp Neighborhood of RT #1 [38118, 42927] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38118-40298 bp Ori: CRC08325.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38178-40251 bp Feature: domain Description: type_I_sec_LssB Location: 38178-402 51 bp Feature: gene Location: 40279-41469 bp Ori: CRC08357.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40360-40804 bp Feature: domain Description: type_I_hlyD Location: 40360-40804 bp Feature: domain Description: type_I_hlyD Location: 40843-41467 bp Feature: domain Description: type_I_hlyD Location: 40843-41467 bp Feature: gene Location: 42012-42785 bp Ori: CRC08408.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42147-42600 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42 147-42 600 bp Feature: gene Location: 42754-42927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11