myRT

myRT report for GCA_001368155.1_10562_2_82

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Seq: CFAS01000002.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10562_2#82, scaffold ERS326513SCcontig000002, whole genome shotgun sequence (261386 bp)
Overview 1 RT 1: 3451-9561 bp Neighborhood of RT #1 [3451, 9590] Mrr_cat Inovirus_Gp2 RVT-GII RT_Bac_retron_I GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3451-4311 bp Ori: CEU96525.1 Feature: domain Description: Mrr_cat Location: 3886-4195 bp Feature: domain Description: Mrr_cat Location: 3886-41 95 bp Feature: gene Location: 4639-5370 bp Ori: CEU96543.1 Feature: domain Description: Inovirus_Gp2 Location: 4684-5338 bp Feature: domain Description: Inovirus_Gp2 Location: 4684-5338 bp Feature: gene Location: 6195-7322 bp Ori: CEU96553.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6396-6783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6396-6783 bp Feature: domain Description: RT_Bac_retron_I Location: 6783-6957 bp Feature: domain Description: RT_Bac_retron_I Location: 6783-6957 bp Feature: domain Description: GIIM Note: maturase Location: 7023-7248 bp Feature: domain Description: GIIM Note: maturase Location: 7023-7248 bp Feature: gene Location: 7784-9223 bp Ori: CEU96580.1 Feature: domain Description: LZ_Tnp_IS66 Location: 7922-8147 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7922-81 47 bp Feature: domain Description: zf-IS66 Location: 8168-8300 bp Feature: domain Description: zf-IS66 Location: 81 68-8300 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8345-9182 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8345-91 82 bp Feature: gene Location: 9243-9590 bp Ori: CEU96590.1 Feature: domain Description: TnpB_IS66 Location: 9270-9561 bp Feature: domain Description: TnpB_IS66 Location: 9270-9561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), Inovirus_Gp2 (pfam11726), RVT-GII, RT_Bac_retron_I (cd01646), GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: CFAS01000035.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10562_2#82, scaffold ERS326513SCcontig000035, whole genome shotgun sequence (43275 bp)
Overview 1 RT 1: 368-5130 bp Neighborhood of RT #1 [368, 5177] RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 368-541 bp Feature: gene Location: 510-1283 bp Ori: CEV30326.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 645-1098 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 645-1098 bp Feature: gene Location: 1826-3016 bp Ori: CEV30332.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 1907-2351 bp Feature: domain Description: type_I_hlyD Location: 1907-2 351 bp Feature: domain Description: type_I_hlyD Location: 2390-3014 bp Feature: domain Description: type_I_hlyD Location: 2 390-3014 bp Feature: gene Location: 2997-5177 bp Ori: CEV30335.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 3057-5130 bp Feature: domain Description: type_I_sec_LssB Location: 3057-5130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)