myRT

myRT report for GCA_001368855.1_VRSK9v1_PRJEB5876

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Seq: LK934233.1 Vibrio crassostreae genome assembly VRSK9v1_PRJEB5876, scaffold VRSK9v1_scaffold8, whole genome shotgun sequence (53147 bp)
Overview 1 RT 1: 22873-28821 bp Neighborhood of RT #1 [22873, 29009] type_I_hlyD RND_mfp HlyD_3 RVT_N RVT-GII GIIM Dam Dam GIY-YIG_SF Feature: gene Location: 22873-24141 bp Feature: domain Description: type_I_hlyD Location: 22987-23290 bp Feature: domain Description: type_I_hlyD Location: 22987-23290 bp Feature: domain Description: RND_mfp Location: 23380-23518 bp Feature: domain Description: RND_mfp Location: 23380-2351 8 bp Feature: domain Description: HlyD_3 Location: 23677-24028 bp Feature: domain Description: HlyD_3 Location: 23677-24028 bp Feature: gene Location: 24487-24807 bp Feature: gene Location: 25825-27297 bp Feature: RT Description: RVT_N Location: 25873-26113 bp Feature: RT Description: RVT_N Location: 25873-261 1 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26161-26788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 61 -26788 bp Feature: domain Description: GIIM Note: maturase Location: 26845-27073 bp Feature: domain Description: GIIM Note: maturase Location: 26845-27073 bp Feature: gene Location: 27641-28309 bp Feature: domain Description: Dam Location: 27650-27767 bp Feature: domain Description: Dam Location: 27650-27767 bp Feature: domain Description: Dam Location: 27863-28094 bp Feature: domain Description: Dam Location: 27863-28094 bp Feature: gene Location: 28473-29009 bp Feature: domain Description: GIY-YIG_SF Location: 28728-28821 bp Feature: domain Description: GIY-YIG_SF Location: 28728-28821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_hlyD (TIGR01843), RND_mfp (TIGR01730), HlyD_3 (pfam13437), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Dam (pfam05869), GIY-YIG_SF (cl15257)

Seq: LK934302.1 Vibrio crassostreae genome assembly VRSK9v1_PRJEB5876, scaffold VRSK9v1_scaffold77, whole genome shotgun sequence (13245 bp)
Overview 1 RT 1: 8876-12636 bp Neighborhood of RT #1 [8876, 12638] RVT_N RVT-GII GIIM PRK00024 Feature: gene Location: 8876-9586 bp Feature: gene Location: 10132-10275 bp Feature: gene Location: 10351-11982 bp Feature: RT Description: RVT_N Location: 10558-10801 bp Feature: RT Description: RVT_N Location: 10558-10801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10846-11473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10846-11473 bp Feature: domain Description: GIIM Note: maturase Location: 11533-11758 bp Feature: domain Description: GIIM Note: maturase Location: 11533-11758 bp Feature: gene Location: 11692-11907 bp Feature: gene Location: 12153-12638 bp Feature: domain Description: PRK00024 Location: 12255-12636 bp Feature: domain Description: PRK0002 4 Location: 12 2 55-12 636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK00024 (DNA repair protein RadC)

Seq: LK934360.1 Vibrio crassostreae genome assembly VRSK9v1_PRJEB5876, scaffold VRSK9v1_scaffold135, whole genome shotgun sequence (37230 bp)
Overview 1 RT 1: 420-4634 bp Neighborhood of RT #1 [420, 4634] COG3462 putAbiC RVT_N RVT-GII GIIM Feature: gene Location: 420-1412 bp Feature: domain Description: COG3462 Location: 435-711 bp Feature: domain Description: COG3 462 Location: 43 5-711 bp Feature: domain Description: putAbiC Location: 1017-1239 bp Feature: domain Description: putAbiC Location: 1017-123 9 bp Feature: gene Location: 2209-3681 bp Feature: RT Description: RVT_N Location: 2257-2500 bp Feature: RT Description: RVT_N Location: 2257-2500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-3172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2545-3 172 bp Feature: domain Description: GIIM Note: maturase Location: 3232-3457 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 2-3 457 bp Feature: gene Location: 3908-4384 bp Feature: gene Location: 4452-4634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3462 (Uncharacterized membrane protein ), putAbiC (pfam16872)

Seq: LK934388.1 Vibrio crassostreae genome assembly VRSK9v1_PRJEB5876, scaffold VRSK9v1_scaffold163, whole genome shotgun sequence (11996 bp)
Overview 1 RT 1: 7513-10238 bp Neighborhood of RT #1 [7513, 10238] DDE_Tnp_IS240 RadC RVT-GII GIIM HNHc Feature: gene Location: 7513-7737 bp Feature: domain Description: DDE_Tnp_IS240 Location: 7525-7684 bp Feature: domain Description: DDE_Tnp_IS24 0 Location: 7525-7684 bp Feature: gene Location: 7792-7878 bp Feature: domain Description: RadC Location: 7798-7876 bp Feature: domain Description: RadC Location: 7798-7876 bp Feature: gene Location: 7981-9378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7984-8584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7984 -8584 bp Feature: domain Description: GIIM Note: maturase Location: 8650-8863 bp Feature: domain Description: GIIM Note: maturase Location: 8650-8863 bp Feature: domain Description: HNHc Note: nucleases Location: 9151-9295 bp Feature: domain Description: HNHc Note: nucleases Location: 9151-9295 bp Feature: gene Location: 9616-9732 bp Feature: gene Location: 9936-10238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), RadC (pfam04002), RVT-GII, GIIM (pfam08388), HNHc (smart00507)