myRT

myRT report for GCA_001372915.1_SSCC32135

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Seq: CDNQ01000003.1 [Clostridium] sordellii genome assembly SSCC32135, contig SSCC32135_1, whole genome shotgun sequence (2467772 bp)
Overview 1 RT 1: 1187882-1195829 bp Neighborhood of RT #1 [1187882, 1195837] SSL2 HNHc TPR TPR TPR_1 PrfC RVT-UG13 Sa_NUDIX Sa_NUDIX Feature: gene Location: 1187882-1190794 bp Ori: CEO12017.1 Feature: domain Description: SSL2 Location: 1187936-1189121 bp Feature: domain Description: SSL2 Location: 1 1 87936-1 1 891 21 bp Feature: domain Description: HNHc Note: nucleases Location: 1189964-1190078 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 89964-1 1 90078 bp Feature: domain Description: TPR Location: 1190147-1190402 bp Feature: domain Description: TPR Location: 1 1 901 47-1 1 90402 bp Feature: domain Description: TPR Location: 1190408-1190612 bp Feature: domain Description: TPR Location: 1 1 90408-1 1 9061 2 bp Feature: domain Description: TPR_1 Location: 1190636-1190720 bp Feature: domain Description: TPR_1 Location: 1 1 90636-1 1 90720 bp Feature: gene Location: 1191039-1192637 bp Ori: CEO12019.1 Gene: prfC Feature: domain Description: PrfC Location: 1191063-1192629 bp Feature: domain Description: PrfC Location: 1 1 91 063-1 1 92629 bp Feature: gene Location: 1193403-1195019 bp Ori: CEO12021.1 Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 1193811-1194297 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 1 1 9381 1 -1 1 94297 bp Feature: gene Location: 1195022-1195498 bp Ori: CEO12022.1 Feature: domain Description: Sa_NUDIX Location: 1195238-1195496 bp Feature: domain Description: Sa_NUDIX Location: 1 1 95238-1 1 95496 bp Feature: gene Location: 1195511-1195837 bp Ori: CEO12024.1 Feature: domain Description: Sa_NUDIX Location: 1195517-1195829 bp Feature: domain Description: Sa_NUDIX Location: 1 1 9551 7-1 1 95829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), HNHc (smart00507), TPR (smart00028), TPR_1 (pfam00515), PrfC (COG4108), RVT-UG13, Sa_NUDIX (pfam18167)