myRT

myRT report for GCA_001373215.1_207A_L2_assembly

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Seq: CDRT01000353.1 Escherichia coli genome assembly 207A_L2_assembly, contig HI.207A_L2_c353, whole genome shotgun sequence (3159 bp)
Overview 1 RT 1: 2-3112 bp Neighborhood of RT #1 [2, 3114] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-436 bp Feature: domain Description: PHA02517 Location: 17-371 bp Feature: domain Description: PHA0251 7 Location: 1 7-371 bp Feature: gene Location: 1028-2551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301-2033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 301 -2033 bp Feature: domain Description: GIIM Note: maturase Location: 2108-2306 bp Feature: domain Description: GIIM Note: maturase Location: 21 08-2306 bp Feature: gene Location: 2728-3114 bp Feature: domain Description: PHA02517 Location: 2731-3112 bp Feature: domain Description: PHA0251 7 Location: 2731 -31 1 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: CDRT01000615.1 Escherichia coli genome assembly 207A_L2_assembly, contig HI.207A_L2_c622, whole genome shotgun sequence (5298 bp)
Overview 1 RT 1: 1232-4732 bp Neighborhood of RT #1 [1232, 4734] CbeA_antitoxin CbtA_toxin RVT-UG11 HemC hemD Feature: gene Location: 1232-1549 bp Feature: domain Description: CbeA_antitoxin Location: 1247-1544 bp Feature: domain Description: CbeA_antitoxin Location: 12 47-1544 bp Feature: gene Location: 1570-1899 bp Feature: domain Description: CbtA_toxin Location: 1573-1894 bp Feature: domain Description: CbtA_toxin Location: 1573-1894 bp Feature: gene Location: 2212-2985 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2347-2800 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 347-2 800 bp Feature: gene Location: 3557-3997 bp Feature: domain Description: HemC Location: 3632-3974 bp Feature: domain Description: HemC Location: 3632 -3974 bp Feature: gene Location: 4039-4734 bp Feature: domain Description: hemD Location: 4045-4732 bp Feature: domain Description: hemD Location: 4045-4732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbeA_antitoxin (pfam06154), CbtA_toxin (pfam06755), RVT-UG11, HemC (COG0181), hemD (PRK05928)

Seq: CDRT01000720.1 Escherichia coli genome assembly 207A_L2_assembly, contig HI.207A_L2_c742, whole genome shotgun sequence (2159 bp)
Overview 1 RT 1: 1-2068 bp Neighborhood of RT #1 [1, 2068] RhsA RVT-GII Feature: gene Location: 1-861 bp Feature: domain Description: RhsA Location: 7-772 bp Feature: domain Description: RhsA Location: 7-772 bp Feature: gene Location: 884-1786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1568-1757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1568-1757 bp Feature: gene Location: 1832-2068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RVT-GII