myRT

myRT report for GCA_001373395.1_PRJEB8430_assembly_1

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Seq: CTEE01000002.1 Mycobacterium lentiflavum genome assembly PRJEB8430_assembly_1, contig CONTIG000002, whole genome shotgun sequence (361892 bp)
Overview 1 RT 1: 111-3977 bp 2 RT 2: 164932-174450 bp 3 RT 3: 209998-214478 bp 4 RT 4: 317159-326104 bp Neighborhood of RT #1 [111, 4003] RVT-GII GIIM HTH_Tnp_1 HTH_21 PHA02517 Neighborhood of RT #2 [164932, 174450] InsE PHA02517 RVT-GII GIIM PHA02517 hi_GC_hi_GC_hi_GC_TIGR00026 RVT-GII GIIM PinE Zn_ribbon_recom excise Neighborhood of RT #3 [209998, 214478] HTH_Tnp_1 RVT-GII GIIM Tra5 Neighborhood of RT #4 [317159, 326142] LZ_Tnp_IS481 Tra5 InsE RVT-GII Recombinase Zn_ribbon_recom HTH_17 HTH_17 PinE RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 111-1559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1 1 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1386 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 91 -1 386 bp Feature: gene Location: 2089-2850 bp Feature: domain Description: HTH_Tnp_1 Location: 2095-2320 bp Feature: domain Description: HTH_Tnp_1 Location: 2095-2320 bp Feature: domain Description: HTH_21 Location: 2521-2671 bp Feature: domain Description: HTH_21 Location: 2521 -2671 bp Feature: gene Location: 3071-4003 bp Feature: domain Description: PHA02517 Location: 3146-3977 bp Feature: domain Description: PHA0251 7 Location: 31 46-3977 bp Feature: gene Location: 164932-165231 bp Feature: domain Description: InsE Location: 164935-165223 bp Feature: domain Description: InsE Location: 1 64935-1 65223 bp Feature: gene Location: 165243-165719 bp Feature: domain Description: PHA02517 Location: 165297-165645 bp Feature: domain Description: PHA0251 7 Location: 1 65297-1 65645 bp Feature: gene Location: 166249-167697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166567-167254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66567-1 67254 bp Feature: domain Description: GIIM Note: maturase Location: 167329-167524 bp Feature: domain Description: GIIM Note: maturase Location: 1 67329-1 67524 bp Feature: gene Location: 167655-168281 bp Feature: domain Description: PHA02517 Location: 167805-168264 bp Feature: domain Description: PHA0251 7 Location: 1 67805-1 68264 bp Feature: gene Location: 168331-168540 bp Feature: gene Location: 168924-169202 bp Feature: gene Location: 169318-169773 bp Feature: domain Description: hi_GC_hi_GC_hi_GC_TIGR00026 Location: 169420-169663 bp Feature: domain Description: hi_GC_hi_GC_hi_GC_TIGR00026 Location: 1 69420-1 69663 bp Feature: gene Location: 170740-171906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170830-171484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70830-1 71 484 bp Feature: domain Description: GIIM Note: maturase Location: 171556-171784 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 556-1 71 784 bp Feature: gene Location: 171939-173990 bp Feature: domain Description: PinE Location: 171987-172566 bp Feature: domain Description: PinE Location: 1 71 987-1 72566 bp Feature: domain Description: Zn_ribbon_recom Location: 172926-173091 bp Feature: domain Description: Zn_ribbon_recom Location: 1 72926-1 73091 bp Feature: domain Description: excise Location: 173778-173895 bp Feature: domain Description: excise Location: 1 73778-1 73895 bp Feature: gene Location: 174100-174450 bp Feature: gene Location: 209998-210441 bp Feature: domain Description: HTH_Tnp_1 Location: 210094-210337 bp Feature: domain Description: HTH_Tnp_1 Location: 21 0094-21 0337 bp Feature: gene Location: 210444-210962 bp Feature: gene Location: 211492-212940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211810-212497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 81 0-21 2497 bp Feature: domain Description: GIIM Note: maturase Location: 212572-212767 bp Feature: domain Description: GIIM Note: maturase Location: 21 2572-21 2767 bp Feature: gene Location: 213054-213656 bp Feature: domain Description: Tra5 Location: 213072-213513 bp Feature: domain Description: Tra5 Location: 21 3072-21 351 3 bp Feature: gene Location: 213867-214478 bp Feature: gene Location: 317159-318964 bp Feature: domain Description: LZ_Tnp_IS481 Location: 317225-317399 bp Feature: domain Description: LZ_Tnp_IS481 Location: 31 7225-31 7399 bp Feature: domain Description: Tra5 Location: 317399-318062 bp Feature: domain Description: Tra5 Location: 31 7399-31 8062 bp Feature: gene Location: 319520-319888 bp Feature: domain Description: InsE Location: 319529-319829 bp Feature: domain Description: InsE Location: 31 9529-31 9829 bp Feature: gene Location: 320457-321050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320787-321036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320787-321 036 bp Feature: gene Location: 321060-322655 bp Feature: domain Description: Recombinase Location: 321120-321378 bp Feature: domain Description: Recombinase Location: 321 1 20-321 378 bp Feature: domain Description: Zn_ribbon_recom Location: 321438-321615 bp Feature: domain Description: Zn_ribbon_recom Location: 321 438-321 61 5 bp Feature: domain Description: HTH_17 Location: 322332-322452 bp Feature: domain Description: HTH_1 7 Location: 322332-322452 bp Feature: domain Description: HTH_17 Location: 322530-322623 bp Feature: domain Description: HTH_1 7 Location: 322530-322623 bp Feature: gene Location: 322616-323278 bp Feature: domain Description: PinE Location: 322661-323186 bp Feature: domain Description: PinE Location: 322661 -3231 86 bp Feature: gene Location: 323271-323453 bp Feature: gene Location: 323823-324698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323832-324255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323832-324255 bp Feature: domain Description: GIIM Note: maturase Location: 324330-324558 bp Feature: domain Description: GIIM Note: maturase Location: 324330-324558 bp Feature: gene Location: 324830-325486 bp Feature: domain Description: PHA02517 Location: 324932-325442 bp Feature: domain Description: PHA0251 7 Location: 324932-325442 bp Feature: gene Location: 325420-326142 bp Feature: domain Description: PHA02517 Location: 325525-326104 bp Feature: domain Description: PHA0251 7 Location: 325525-3261 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), hi_GC_hi_GC_hi_GC_TIGR00026, PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764)
Tra5 (COG2801), LZ_Tnp_IS481 (pfam13011), Recombinase (pfam07508), HTH_17 (pfam12728)