myRT

myRT report for GCA_001373615.1_213_Tsb_1_contigs_500

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Seq: CTCQ01000037.1 Pseudomonas aeruginosa genome assembly 213_Tsb_1_contgs_500, contig NODE_4_length_384251_cov_25.9145_ID_7, whole genome shotgun sequence (384251 bp)
Overview 1 RT 1: 83561-94231 bp Neighborhood of RT #1 [83561, 94296] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83561-85414 bp Feature: domain Description: PRK05658 Location: 83573-85412 bp Feature: domain Description: PRK05658 Location: 83573-8541 2 bp Feature: gene Location: 85521-89258 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85629-86286 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85629-86286 bp Feature: domain Description: PRK09776 Location: 86499-86970 bp Feature: domain Description: PRK09776 Location: 86499-86970 bp Feature: domain Description: PAS Location: 87015-87552 bp Feature: domain Description: PAS Location: 8701 5-87552 bp Feature: domain Description: PRK10060 Location: 87561-89208 bp Feature: domain Description: PRK1 0060 Location: 87561 -89208 bp Feature: gene Location: 90339-92024 bp Feature: RT Description: RVT_N Location: 90396-90636 bp Feature: RT Description: RVT_N Location: 90396-90636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90684-91320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90684-91 320 bp Feature: domain Description: GIIM Note: maturase Location: 91374-91605 bp Feature: domain Description: GIIM Note: maturase Location: 91 374-91 605 bp Feature: domain Description: HNH Note: nucleases Location: 91857-91995 bp Feature: domain Description: HNH Note: nucleases Location: 91 857-91 995 bp Feature: gene Location: 92747-93868 bp Feature: domain Description: COG3177 Location: 92765-93857 bp Feature: domain Description: COG31 77 Location: 92765-93857 bp Feature: gene Location: 93961-94296 bp Feature: domain Description: NERD Location: 94060-94231 bp Feature: domain Description: NERD Location: 94060-94231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)