myRT

myRT report for GCA_001373795.1_242_15Pc_5_contigs_500

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Seq: CTDJ01000021.1 Pseudomonas aeruginosa genome assembly 242_15Pc_5_contgs_500, contig NODE_3_length_384101_cov_25.5373_ID_5, whole genome shotgun sequence (384101 bp)
Overview 1 RT 1: 289743-300476 bp Neighborhood of RT #1 [289743, 300478] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 289743-290078 bp Feature: domain Description: NERD Location: 289842-290007 bp Feature: domain Description: NERD Location: 289842-290007 bp Feature: gene Location: 290171-291292 bp Feature: domain Description: COG3177 Location: 290189-291281 bp Feature: domain Description: COG31 77 Location: 2901 89-291 281 bp Feature: gene Location: 292015-293700 bp Feature: RT Description: RVT_N Location: 292072-292312 bp Feature: RT Description: RVT_N Location: 292072-29231 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292360-292996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292360-292996 bp Feature: domain Description: GIIM Note: maturase Location: 293050-293281 bp Feature: domain Description: GIIM Note: maturase Location: 293050-293281 bp Feature: domain Description: HNH Note: nucleases Location: 293533-293671 bp Feature: domain Description: HNH Note: nucleases Location: 293533-293671 bp Feature: gene Location: 294781-298518 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294889-295546 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294889-295546 bp Feature: domain Description: PRK09776 Location: 295759-296230 bp Feature: domain Description: PRK09776 Location: 295759-296230 bp Feature: domain Description: PAS Location: 296275-296812 bp Feature: domain Description: PAS Location: 296275-29681 2 bp Feature: domain Description: PRK10060 Location: 296821-298468 bp Feature: domain Description: PRK1 0060 Location: 296821 -298468 bp Feature: gene Location: 298625-300478 bp Feature: domain Description: PRK05658 Location: 298637-300476 bp Feature: domain Description: PRK05658 Location: 298637-300476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)