myRT

myRT report for GCA_001373915.1_248_Rw198_contigs_500

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Seq: CTDN01000025.1 Pseudomonas aeruginosa genome assembly 248_Rw198_contgs_500, contig NODE_4_length_384263_cov_20.4036_ID_7, whole genome shotgun sequence (384263 bp)
Overview 1 RT 1: 83573-94243 bp Neighborhood of RT #1 [83573, 94308] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83573-85426 bp Feature: domain Description: PRK05658 Location: 83585-85424 bp Feature: domain Description: PRK05658 Location: 83585-85424 bp Feature: gene Location: 85533-89270 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85641-86298 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85641 -86298 bp Feature: domain Description: PRK09776 Location: 86511-86982 bp Feature: domain Description: PRK09776 Location: 8651 1 -86982 bp Feature: domain Description: PAS Location: 87027-87564 bp Feature: domain Description: PAS Location: 87027-87564 bp Feature: domain Description: PRK10060 Location: 87573-89220 bp Feature: domain Description: PRK1 0060 Location: 87573-89220 bp Feature: gene Location: 90351-92036 bp Feature: RT Description: RVT_N Location: 90408-90648 bp Feature: RT Description: RVT_N Location: 90408-90648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90696-91332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90696-91 332 bp Feature: domain Description: GIIM Note: maturase Location: 91386-91617 bp Feature: domain Description: GIIM Note: maturase Location: 91 386-91 61 7 bp Feature: domain Description: HNH Note: nucleases Location: 91869-92007 bp Feature: domain Description: HNH Note: nucleases Location: 91 869-92007 bp Feature: gene Location: 92759-93880 bp Feature: domain Description: COG3177 Location: 92777-93869 bp Feature: domain Description: COG31 77 Location: 92777-93869 bp Feature: gene Location: 93973-94308 bp Feature: domain Description: NERD Location: 94072-94243 bp Feature: domain Description: NERD Location: 94072-94243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)