myRT

myRT report for GCA_001374035.1_280_15_311Bb_contigs_500

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Seq: CUXX01000020.1 Pseudomonas aeruginosa genome assembly 280_15_311Bb_contgs_500, contig NODE_80_length_23301_cov_49.5876_ID_159, whole genome shotgun sequence (23301 bp)
Overview 1 RT 1: 20919-22846 bp Neighborhood of RT #1 [20919, 23025] RVT-GII GIIM Feature: gene Location: 20919-21131 bp Feature: gene Location: 21284-21454 bp Feature: gene Location: 21604-23025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21961-22576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 961 -22576 bp Feature: domain Description: GIIM Note: maturase Location: 22633-22846 bp Feature: domain Description: GIIM Note: maturase Location: 22633-22846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CUXX01000055.1 Pseudomonas aeruginosa genome assembly 280_15_311Bb_contgs_500, contig NODE_9_length_187349_cov_24.9644_ID_17, whole genome shotgun sequence (187349 bp)
Overview 1 RT 1: 47376-56238 bp 2 RT 2: 72501-81800 bp Neighborhood of RT #1 [47376, 56246] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [72501, 81800] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH HipA_C Feature: gene Location: 47376-48050 bp Feature: domain Description: NTP_transferase_like_1 Location: 47382-48021 bp Feature: domain Description: NTP_transferase_like_1 Location: 47382 -4802 1 bp Feature: gene Location: 48047-49063 bp Feature: domain Description: COG3178 Location: 48050-49049 bp Feature: domain Description: COG3178 Location: 48050-49049 bp Feature: gene Location: 50336-52048 bp Feature: RT Description: RVT_N Location: 50393-50636 bp Feature: RT Description: RVT_N Location: 50393-50636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50681-51317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50681-51317 bp Feature: domain Description: YkfC Location: 51524-51677 bp Feature: domain Description: YkfC Location: 5152 4-51677 bp Feature: domain Description: HNH Note: nucleases Location: 51854-51992 bp Feature: domain Description: HNH Note: nucleases Location: 51854-51992 bp Feature: gene Location: 52181-54973 bp Feature: domain Description: LptD Location: 52376-54959 bp Feature: domain Description: LptD Location: 52 376-54959 bp Feature: gene Location: 55032-56246 bp Feature: domain Description: PRK10770 Location: 55044-56238 bp Feature: domain Description: PRK10770 Location: 55044-562 38 bp Feature: gene Location: 72501-74360 bp Feature: domain Description: PRK05658 Location: 72513-74358 bp Feature: domain Description: PRK05658 Location: 72 513-74358 bp Feature: gene Location: 74467-78204 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 74575-75232 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 74575-752 32 bp Feature: domain Description: PRK09776 Location: 75445-75916 bp Feature: domain Description: PRK09776 Location: 75445-75916 bp Feature: domain Description: PAS Location: 76006-76498 bp Feature: domain Description: PAS Location: 76006-76498 bp Feature: domain Description: PRK10060 Location: 76507-78154 bp Feature: domain Description: PRK10060 Location: 76507-78154 bp Feature: gene Location: 79285-80970 bp Feature: RT Description: RVT_N Location: 79342-79582 bp Feature: RT Description: RVT_N Location: 79342 -79582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79630-80266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79630-802 66 bp Feature: domain Description: GIIM Note: maturase Location: 80320-80551 bp Feature: domain Description: GIIM Note: maturase Location: 8032 0-80551 bp Feature: domain Description: HNH Note: nucleases Location: 80803-80941 bp Feature: domain Description: HNH Note: nucleases Location: 80803-80941 bp Feature: gene Location: 81274-81591 bp Feature: domain Description: HipA_C Location: 81307-81472 bp Feature: domain Description: HipA_C Location: 81307-81472 bp Feature: gene Location: 81606-81800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), HipA_C (pfam07804)

Seq: CUXX01000063.1 Pseudomonas aeruginosa genome assembly 280_15_311Bb_contgs_500, contig NODE_7_length_203492_cov_24.0114_ID_13, whole genome shotgun sequence (203492 bp)
Overview 1 RT 1: 146680-150882 bp Neighborhood of RT #1 [146680, 150905] Dcm RVT-DGRs Avd_like Feature: gene Location: 146680-147324 bp Feature: gene Location: 147321-149153 bp Feature: domain Description: Dcm Location: 147390-148056 bp Feature: domain Description: Dcm Location: 1473 90-148056 bp Feature: gene Location: 149150-150568 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149654-150341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 149654-1503 41 bp Feature: gene Location: 150255-150491 bp Feature: gene Location: 150543-150905 bp Feature: domain Description: Avd_like Location: 150570-150882 bp Feature: domain Description: Avd_like Location: 150570-150882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376)