myRT

myRT report for GCA_001374135.1_283_Rw172_contigs_500

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Seq: CUXY01000022.1 Pseudomonas aeruginosa genome assembly 283_Rw172_contgs_500, contig NODE_84_length_23301_cov_37.3814_ID_167, whole genome shotgun sequence (23301 bp)
Overview 1 RT 1: 20919-22846 bp Neighborhood of RT #1 [20919, 23025] RVT-GII GIIM Feature: gene Location: 20919-21131 bp Feature: gene Location: 21284-21454 bp Feature: gene Location: 21604-23025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21961-22576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 961 -22576 bp Feature: domain Description: GIIM Note: maturase Location: 22633-22846 bp Feature: domain Description: GIIM Note: maturase Location: 22633-22846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CUXY01000071.1 Pseudomonas aeruginosa genome assembly 283_Rw172_contgs_500, contig NODE_54_length_45491_cov_46.4263_ID_107, whole genome shotgun sequence (45491 bp)
Overview 1 RT 1: 38840-43065 bp Neighborhood of RT #1 [38840, 43065] Avd_like RVT-DGRs Dcm Feature: gene Location: 38840-39202 bp Feature: domain Description: Avd_like Location: 38867-39179 bp Feature: domain Description: Avd_like Location: 38867-39179 bp Feature: gene Location: 39254-39490 bp Feature: gene Location: 39177-40595 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39681-40368 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 39681-40368 bp Feature: gene Location: 40592-42424 bp Feature: domain Description: Dcm Location: 40661-41327 bp Feature: domain Description: Dcm Location: 40661-4132 7 bp Feature: gene Location: 42421-43065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Dcm (COG0270)

Seq: CUXY01000154.1 Pseudomonas aeruginosa genome assembly 283_Rw172_contgs_500, contig NODE_7_length_187349_cov_18.7633_ID_13, whole genome shotgun sequence (187349 bp)
Overview 1 RT 1: 105538-114847 bp 2 RT 2: 131104-139945 bp Neighborhood of RT #1 [105538, 114849] HipA_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [131104, 139974] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 105538-105744 bp Feature: gene Location: 105759-106076 bp Feature: domain Description: HipA_C Location: 105792-105957 bp Feature: domain Description: HipA_C Location: 105792-105957 bp Feature: gene Location: 106380-108065 bp Feature: RT Description: RVT_N Location: 106437-106677 bp Feature: RT Description: RVT_N Location: 10643 7-106677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106725-107361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106725-1073 61 bp Feature: domain Description: GIIM Note: maturase Location: 107415-107646 bp Feature: domain Description: GIIM Note: maturase Location: 107415-107646 bp Feature: domain Description: HNH Note: nucleases Location: 107898-108036 bp Feature: domain Description: HNH Note: nucleases Location: 107898-10803 6 bp Feature: gene Location: 109146-112883 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 109254-109911 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 109254-109911 bp Feature: domain Description: PRK09776 Location: 110124-110595 bp Feature: domain Description: PRK09776 Location: 110124-110595 bp Feature: domain Description: PAS Location: 110685-111177 bp Feature: domain Description: PAS Location: 110685-111177 bp Feature: domain Description: PRK10060 Location: 111186-112833 bp Feature: domain Description: PRK10060 Location: 111186-11283 3 bp Feature: gene Location: 112990-114849 bp Feature: domain Description: PRK05658 Location: 113002-114847 bp Feature: domain Description: PRK05658 Location: 113 002-114847 bp Feature: gene Location: 131104-132318 bp Feature: domain Description: PRK10770 Location: 131116-132310 bp Feature: domain Description: PRK10770 Location: 13 1116-13 23 10 bp Feature: gene Location: 132377-135169 bp Feature: domain Description: LptD Location: 132572-135155 bp Feature: domain Description: LptD Location: 13 2572-13 5155 bp Feature: gene Location: 135302-137014 bp Feature: RT Description: RVT_N Location: 135359-135602 bp Feature: RT Description: RVT_N Location: 13 53 59-13 5602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135647-136283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 5647-13 6283 bp Feature: domain Description: YkfC Location: 136490-136643 bp Feature: domain Description: YkfC Location: 13 6490-13 6643 bp Feature: domain Description: HNH Note: nucleases Location: 136820-136958 bp Feature: domain Description: HNH Note: nucleases Location: 13 6820-13 6958 bp Feature: gene Location: 138287-139303 bp Feature: domain Description: COG3178 Location: 138290-139289 bp Feature: domain Description: COG3 178 Location: 13 8290-13 9289 bp Feature: gene Location: 139300-139974 bp Feature: domain Description: NTP_transferase_like_1 Location: 139306-139945 bp Feature: domain Description: NTP_transferase_like_1 Location: 13 93 06-13 9945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipA_C (pfam07804), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)