myRT

myRT report for GCA_001374155.1_284_Rw202_contigs_500

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Seq: CTFL01000112.1 Pseudomonas aeruginosa genome assembly 284_Rw202_contgs_500, contig NODE_109_length_2439_cov_72.7987_ID_217, whole genome shotgun sequence (2439 bp)
Overview 1 RT 1: 88-2203 bp Neighborhood of RT #1 [88, 2203] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 88-1812 bp Feature: RT Description: RVT_N Location: 151-388 bp Feature: RT Description: RVT_N Location: 1 51 -388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439-1 090 bp Feature: domain Description: GIIM Note: maturase Location: 1144-1375 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 44-1 375 bp Feature: domain Description: HNHc Note: nucleases Location: 1609-1765 bp Feature: domain Description: HNHc Note: nucleases Location: 1 609-1 765 bp Feature: gene Location: 1860-2036 bp Feature: gene Location: 2075-2203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CTFL01000143.1 Pseudomonas aeruginosa genome assembly 284_Rw202_contgs_500, contig NODE_27_length_89822_cov_22.3519_ID_53, whole genome shotgun sequence (89822 bp)
Overview 1 RT 1: 50060-58229 bp 2 RT 2: 74493-84790 bp Neighborhood of RT #1 [50060, 58237] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74493, 84801] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 50060-51076 bp Feature: domain Description: COG3178 Location: 50063-51062 bp Feature: domain Description: COG3178 Location: 50063-51062 bp Feature: gene Location: 51373-51507 bp Feature: gene Location: 52348-54060 bp Feature: RT Description: RVT_N Location: 52405-52648 bp Feature: RT Description: RVT_N Location: 52 405-52 648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52693-53329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 693-5332 9 bp Feature: domain Description: YkfC Location: 53539-53689 bp Feature: domain Description: YkfC Location: 53539-53689 bp Feature: domain Description: HNH Note: nucleases Location: 53866-54004 bp Feature: domain Description: HNH Note: nucleases Location: 53866-54004 bp Feature: gene Location: 54193-56964 bp Feature: domain Description: LptD Location: 54388-56950 bp Feature: domain Description: LptD Location: 54388-56950 bp Feature: gene Location: 57023-58237 bp Feature: domain Description: PRK10770 Location: 57035-58229 bp Feature: domain Description: PRK10770 Location: 57035-582 2 9 bp Feature: gene Location: 74493-76346 bp Feature: domain Description: PRK05658 Location: 74505-76344 bp Feature: domain Description: PRK05658 Location: 74505-76344 bp Feature: gene Location: 76453-80190 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76561-77218 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 76561-772 18 bp Feature: domain Description: PRK09776 Location: 77431-77902 bp Feature: domain Description: PRK09776 Location: 77431-77902 bp Feature: domain Description: PAS Location: 77959-78484 bp Feature: domain Description: PAS Location: 77959-78484 bp Feature: domain Description: PRK10060 Location: 78493-80140 bp Feature: domain Description: PRK10060 Location: 78493-80140 bp Feature: gene Location: 81271-82956 bp Feature: RT Description: RVT_N Location: 81328-81568 bp Feature: RT Description: RVT_N Location: 8132 8-81568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81616-82252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81616-82 2 52 bp Feature: domain Description: GIIM Note: maturase Location: 82306-82537 bp Feature: domain Description: GIIM Note: maturase Location: 82 306-82 537 bp Feature: domain Description: HNH Note: nucleases Location: 82789-82927 bp Feature: domain Description: HNH Note: nucleases Location: 82 789-82 92 7 bp Feature: gene Location: 83284-83421 bp Feature: gene Location: 83680-84801 bp Feature: domain Description: COG3177 Location: 83698-84790 bp Feature: domain Description: COG3177 Location: 83698-84790 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )