myRT

myRT report for GCA_001374175.1_285_Tsb_7_contigs_500

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Seq: CUXZ01000034.1 Pseudomonas aeruginosa genome assembly 285_Tsb_7_contgs_500, contig NODE_1_length_377962_cov_22.8711_ID_1, whole genome shotgun sequence (377962 bp)
Overview 1 RT 1: 49722-58566 bp 2 RT 2: 74830-85125 bp Neighborhood of RT #1 [49722, 58574] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74830, 85136] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 49722-50396 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: domain Description: NTP_transferase_like_1 Location: 49728-50367 bp Feature: gene Location: 50393-51409 bp Feature: domain Description: COG3178 Location: 50396-51395 bp Feature: domain Description: COG31 78 Location: 50396-51 395 bp Feature: gene Location: 52682-54394 bp Feature: RT Description: RVT_N Location: 52739-52982 bp Feature: RT Description: RVT_N Location: 52739-52982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53027-53663 bp Feature: domain Description: YkfC Location: 53870-54023 bp Feature: domain Description: YkfC Location: 53870-54023 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: domain Description: HNH Note: nucleases Location: 54200-54338 bp Feature: gene Location: 54527-57301 bp Feature: domain Description: LptD Location: 54722-57287 bp Feature: domain Description: LptD Location: 54722-57287 bp Feature: gene Location: 57360-58574 bp Feature: domain Description: PRK10770 Location: 57372-58566 bp Feature: domain Description: PRK1 0770 Location: 57372-58566 bp Feature: gene Location: 74830-76683 bp Feature: domain Description: PRK05658 Location: 74842-76681 bp Feature: domain Description: PRK05658 Location: 74842-76681 bp Feature: gene Location: 76790-80527 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76898-77555 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76898-77555 bp Feature: domain Description: PRK09776 Location: 77768-78239 bp Feature: domain Description: PRK09776 Location: 77768-78239 bp Feature: domain Description: PAS Location: 78311-78821 bp Feature: domain Description: PAS Location: 7831 1 -78821 bp Feature: domain Description: PRK10060 Location: 78830-80477 bp Feature: domain Description: PRK1 0060 Location: 78830-80477 bp Feature: gene Location: 81608-83293 bp Feature: RT Description: RVT_N Location: 81665-81905 bp Feature: RT Description: RVT_N Location: 81 665-81 905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81953-82589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 953-82589 bp Feature: domain Description: GIIM Note: maturase Location: 82643-82874 bp Feature: domain Description: GIIM Note: maturase Location: 82643-82874 bp Feature: domain Description: HNH Note: nucleases Location: 83126-83264 bp Feature: domain Description: HNH Note: nucleases Location: 831 26-83264 bp Feature: gene Location: 83619-83756 bp Feature: gene Location: 84015-85136 bp Feature: domain Description: COG3177 Location: 84033-85125 bp Feature: domain Description: COG31 77 Location: 84033-851 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )

Seq: CUXZ01000060.1 Pseudomonas aeruginosa genome assembly 285_Tsb_7_contgs_500, contig NODE_13_length_173694_cov_18.9466_ID_25, whole genome shotgun sequence (173694 bp)
Overview 1 RT 1: 168482-173456 bp Neighborhood of RT #1 [168482, 173620] DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF Feature: gene Location: 168482-168787 bp Feature: gene Location: 168923-169978 bp Feature: domain Description: DEXHc_Snf Location: 169142-169403 bp Feature: domain Description: DEXHc_Snf Location: 169142 -169403 bp Feature: gene Location: 170575-172293 bp Feature: RT Description: RVT_N Location: 170632-170869 bp Feature: RT Description: RVT_N Location: 170632 -170869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170920-171571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17092 0-171571 bp Feature: domain Description: GIIM Note: maturase Location: 171625-171856 bp Feature: domain Description: GIIM Note: maturase Location: 17162 5-171856 bp Feature: domain Description: HNHc Note: nucleases Location: 172090-172246 bp Feature: domain Description: HNHc Note: nucleases Location: 172 090-172 2 46 bp Feature: gene Location: 172460-173620 bp Feature: domain Description: SF2_C_SNF Location: 173078-173456 bp Feature: domain Description: SF2 _C_SNF Location: 173078-173456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: CUXZ01000126.1 Pseudomonas aeruginosa genome assembly 285_Tsb_7_contgs_500, contig NODE_18_length_148429_cov_22.9071_ID_35, whole genome shotgun sequence (148429 bp)
Overview 1 RT 1: 66173-73097 bp Neighborhood of RT #1 [66173, 73180] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 66173-67717 bp Feature: domain Description: CHD Location: 66389-66803 bp Feature: domain Description: CHD Location: 663 89-66803 bp Feature: domain Description: CHD Location: 67031-67520 bp Feature: domain Description: CHD Location: 6703 1-67520 bp Feature: gene Location: 68801-68980 bp Feature: gene Location: 69712-70980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69925-70582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69925-70582 bp Feature: domain Description: GIIM Note: maturase Location: 70660-70882 bp Feature: domain Description: GIIM Note: maturase Location: 70660-70882 bp Feature: gene Location: 71369-72010 bp Feature: domain Description: DUF772 Location: 71519-71714 bp Feature: domain Description: DUF772 Location: 71519-71714 bp Feature: gene Location: 72353-73180 bp Feature: domain Description: ABC_phnC Location: 72383-73097 bp Feature: domain Description: ABC_phnC Location: 723 83 -73 097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)