myRT

myRT report for GCA_001374255.1_289_15Pc_1_contigs_500

Download annotations/find similar RTs

Seq: CUYD01000083.1 Pseudomonas aeruginosa genome assembly 289_15Pc_1_contgs_500, contig NODE_18_length_104913_cov_17.341_ID_35, whole genome shotgun sequence (104913 bp)
Overview 1 RT 1: 93387-102224 bp Neighborhood of RT #1 [93387, 102253] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 93387-94601 bp Feature: domain Description: PRK10770 Location: 93399-94593 bp Feature: domain Description: PRK1 0770 Location: 93399-94593 bp Feature: gene Location: 94660-97449 bp Feature: domain Description: LptD Location: 94855-97435 bp Feature: domain Description: LptD Location: 94855-97435 bp Feature: gene Location: 97582-99294 bp Feature: domain Description: RVT_N Location: 97639-97882 bp Feature: domain Description: RVT_N Location: 97639-97882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97927-98560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97927-98560 bp Feature: domain Description: YkfC Location: 98773-98923 bp Feature: domain Description: YkfC Location: 98773-98923 bp Feature: domain Description: HNH Note: nucleases Location: 99100-99238 bp Feature: domain Description: HNH Note: nucleases Location: 991 00-99238 bp Feature: gene Location: 100566-101582 bp Feature: domain Description: COG3178 Location: 100569-101568 bp Feature: domain Description: COG31 78 Location: 1 00569-1 01 568 bp Feature: gene Location: 101579-102253 bp Feature: domain Description: NTP_transferase_like_1 Location: 101585-102224 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 01 585-1 02224 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CUYD01000091.1 Pseudomonas aeruginosa genome assembly 289_15Pc_1_contgs_500, contig NODE_78_length_12496_cov_82.1935_ID_155, whole genome shotgun sequence (12496 bp)
Overview 1 RT 1: 10114-12041 bp Neighborhood of RT #1 [10114, 12220] RVT-GII GIIM Feature: gene Location: 10114-10326 bp Feature: gene Location: 10479-10649 bp Feature: gene Location: 10799-12220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11156-11771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11156-11771 bp Feature: domain Description: GIIM Note: maturase Location: 11828-12041 bp Feature: domain Description: GIIM Note: maturase Location: 1182 8-12 041 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CUYD01000115.1 Pseudomonas aeruginosa genome assembly 289_15Pc_1_contgs_500, contig NODE_22_length_99854_cov_16.0345_ID_43, whole genome shotgun sequence (99854 bp)
Overview 1 RT 1: 80826-87973 bp Neighborhood of RT #1 [80826, 88137] STN TonB-siderophor YHI9 RVT-UG2 PRK06333 HxlR Feature: gene Location: 80826-83228 bp Feature: domain Description: STN Location: 80946-81099 bp Feature: domain Description: STN Location: 80946-81099 bp Feature: domain Description: TonB-siderophor Location: 81207-83166 bp Feature: domain Description: TonB-siderophor Location: 81207-83 166 bp Feature: gene Location: 83389-84225 bp Feature: domain Description: YHI9 Location: 83401-84217 bp Feature: domain Description: YHI9 Location: 83 401-84217 bp Feature: gene Location: 84409-85755 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 84658-85444 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 84658-85444 bp Feature: gene Location: 86254-87522 bp Feature: domain Description: PRK06333 Location: 86260-87517 bp Feature: domain Description: PRK063 3 3 Location: 86260-87517 bp Feature: gene Location: 87631-88137 bp Feature: domain Description: HxlR Location: 87655-87973 bp Feature: domain Description: HxlR Location: 87655-87973 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CUYD01000134.1 Pseudomonas aeruginosa genome assembly 289_15Pc_1_contgs_500, contig NODE_26_length_88152_cov_17.4747_ID_51, whole genome shotgun sequence (88152 bp)
Overview 1 RT 1: 29333-34447 bp Neighborhood of RT #1 [29333, 34455] PRK13360 COG3450 RVT_N RVT-GII GIIM HNHc rpmG Feature: gene Location: 29333-30661 bp Feature: domain Description: PRK13360 Location: 29339-30653 bp Feature: domain Description: PRK13360 Location: 29339-30653 bp Feature: gene Location: 30728-31090 bp Feature: domain Description: COG3450 Location: 30731-31076 bp Feature: domain Description: COG34 50 Location: 30731-31076 bp Feature: gene Location: 31300-33006 bp Feature: domain Description: RVT_N Location: 31357-31597 bp Feature: domain Description: RVT_N Location: 31357-31597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31645-32281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3164 5-32281 bp Feature: domain Description: GIIM Note: maturase Location: 32335-32566 bp Feature: domain Description: GIIM Note: maturase Location: 32335-32566 bp Feature: domain Description: HNHc Note: nucleases Location: 32776-32950 bp Feature: domain Description: HNHc Note: nucleases Location: 32776-32950 bp Feature: gene Location: 33123-33278 bp Feature: gene Location: 34300-34455 bp Feature: domain Description: rpmG Location: 34303-34447 bp Feature: domain Description: rpmG Location: 34 303-34 4 4 7 bp Sorry, your browser does not support inline SVG.
Associated domains: