myRT

myRT report for GCA_001374895.1_253_12_5Pc_7_contigs_500

Download annotations/find similar RTs

Seq: CTDQ01000051.1 Pseudomonas aeruginosa genome assembly 253_12_5Pc_7_contgs_500, contig NODE_6_length_384313_cov_31.2122_ID_11, whole genome shotgun sequence (384313 bp)
Overview 1 RT 1: 289955-300688 bp Neighborhood of RT #1 [289955, 300690] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 289955-290290 bp Feature: domain Description: NERD Location: 290054-290225 bp Feature: domain Description: NERD Location: 290054-290225 bp Feature: gene Location: 290383-291504 bp Feature: domain Description: COG3177 Location: 290401-291493 bp Feature: domain Description: COG31 77 Location: 290401 -291 493 bp Feature: gene Location: 292227-293912 bp Feature: RT Description: RVT_N Location: 292284-292524 bp Feature: RT Description: RVT_N Location: 292284-292524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292572-293208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292572-293208 bp Feature: domain Description: GIIM Note: maturase Location: 293262-293493 bp Feature: domain Description: GIIM Note: maturase Location: 293262-293493 bp Feature: domain Description: HNH Note: nucleases Location: 293745-293883 bp Feature: domain Description: HNH Note: nucleases Location: 293745-293883 bp Feature: gene Location: 294993-298730 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295101-295758 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2951 01 -295758 bp Feature: domain Description: PRK09776 Location: 295971-296442 bp Feature: domain Description: PRK09776 Location: 295971 -296442 bp Feature: domain Description: PAS Location: 296487-297024 bp Feature: domain Description: PAS Location: 296487-297024 bp Feature: domain Description: PRK10060 Location: 297033-298680 bp Feature: domain Description: PRK1 0060 Location: 297033-298680 bp Feature: gene Location: 298837-300690 bp Feature: domain Description: PRK05658 Location: 298849-300688 bp Feature: domain Description: PRK05658 Location: 298849-300688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)