myRT

myRT report for GCA_001374955.1_258_Rw99_contgs_500

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Seq: CTDW01000039.1 Pseudomonas aeruginosa genome assembly 258_Rw99_contgs_500, contig NODE_4_length_384314_cov_30.9806_ID_7, whole genome shotgun sequence (384314 bp)
Overview 1 RT 1: 83624-94294 bp Neighborhood of RT #1 [83624, 94359] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 83624-85477 bp Feature: domain Description: PRK05658 Location: 83636-85475 bp Feature: domain Description: PRK05658 Location: 83636-85475 bp Feature: gene Location: 85584-89321 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85692-86349 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 85692-86349 bp Feature: domain Description: PRK09776 Location: 86562-87033 bp Feature: domain Description: PRK09776 Location: 86562-87033 bp Feature: domain Description: PAS Location: 87078-87615 bp Feature: domain Description: PAS Location: 87078-8761 5 bp Feature: domain Description: PRK10060 Location: 87624-89271 bp Feature: domain Description: PRK1 0060 Location: 87624-89271 bp Feature: gene Location: 90402-92087 bp Feature: RT Description: RVT_N Location: 90459-90699 bp Feature: RT Description: RVT_N Location: 90459-90699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90747-91383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90747-91 383 bp Feature: domain Description: GIIM Note: maturase Location: 91437-91668 bp Feature: domain Description: GIIM Note: maturase Location: 91 437-91 668 bp Feature: domain Description: HNH Note: nucleases Location: 91920-92058 bp Feature: domain Description: HNH Note: nucleases Location: 91 920-92058 bp Feature: gene Location: 92810-93931 bp Feature: domain Description: COG3177 Location: 92828-93920 bp Feature: domain Description: COG31 77 Location: 92828-93920 bp Feature: gene Location: 94024-94359 bp Feature: domain Description: NERD Location: 94123-94294 bp Feature: domain Description: NERD Location: 941 23-94294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)