myRT

myRT report for GCA_001375115.1_266_15Pc_7_contigs_500

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Seq: CTEU01000024.1 Pseudomonas aeruginosa genome assembly 266_15Pc_7_contgs_500, contig NODE_4_length_384251_cov_21.9168_ID_7, whole genome shotgun sequence (384251 bp)
Overview 1 RT 1: 289956-300689 bp Neighborhood of RT #1 [289956, 300691] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 289956-290291 bp Feature: domain Description: NERD Location: 290055-290226 bp Feature: domain Description: NERD Location: 290055-290226 bp Feature: gene Location: 290384-291505 bp Feature: domain Description: COG3177 Location: 290402-291494 bp Feature: domain Description: COG31 77 Location: 290402-291 494 bp Feature: gene Location: 292228-293913 bp Feature: RT Description: RVT_N Location: 292285-292525 bp Feature: RT Description: RVT_N Location: 292285-292525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292573-293209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292573-293209 bp Feature: domain Description: GIIM Note: maturase Location: 293263-293494 bp Feature: domain Description: GIIM Note: maturase Location: 293263-293494 bp Feature: domain Description: HNH Note: nucleases Location: 293746-293884 bp Feature: domain Description: HNH Note: nucleases Location: 293746-293884 bp Feature: gene Location: 294994-298731 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295102-295759 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2951 02-295759 bp Feature: domain Description: PRK09776 Location: 295972-296443 bp Feature: domain Description: PRK09776 Location: 295972-296443 bp Feature: domain Description: PAS Location: 296488-297025 bp Feature: domain Description: PAS Location: 296488-297025 bp Feature: domain Description: PRK10060 Location: 297034-298681 bp Feature: domain Description: PRK1 0060 Location: 297034-298681 bp Feature: gene Location: 298838-300691 bp Feature: domain Description: PRK05658 Location: 298850-300689 bp Feature: domain Description: PRK05658 Location: 298850-300689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)