myRT

myRT report for GCA_001375335.1_277_12_5Pc_9_contigs_500

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Seq: CTFH01000024.1 Pseudomonas aeruginosa genome assembly 277_12_5Pc_9_contgs_500, contig NODE_1_length_686235_cov_23.2595_ID_1, whole genome shotgun sequence (686235 bp)
Overview 1 RT 1: 603984-610908 bp Neighborhood of RT #1 [603984, 610991] CHD CHD RVT-GII GIIM DUF772 ABC_phnC Feature: gene Location: 603984-605528 bp Feature: domain Description: CHD Location: 604200-604614 bp Feature: domain Description: CHD Location: 604200-60461 4 bp Feature: domain Description: CHD Location: 604842-605331 bp Feature: domain Description: CHD Location: 604842-605331 bp Feature: gene Location: 606612-606791 bp Feature: gene Location: 607523-608791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607736-608393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607736-608393 bp Feature: domain Description: GIIM Note: maturase Location: 608471-608693 bp Feature: domain Description: GIIM Note: maturase Location: 608471 -608693 bp Feature: gene Location: 609180-609821 bp Feature: domain Description: DUF772 Location: 609330-609525 bp Feature: domain Description: DUF772 Location: 609330-609525 bp Feature: gene Location: 610164-610991 bp Feature: domain Description: ABC_phnC Location: 610194-610908 bp Feature: domain Description: ABC_phnC Location: 61 01 94-61 0908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), ABC_phnC (TIGR02315)

Seq: CTFH01000070.1 Pseudomonas aeruginosa genome assembly 277_12_5Pc_9_contgs_500, contig NODE_5_length_378356_cov_23.1916_ID_9, whole genome shotgun sequence (378356 bp)
Overview 1 RT 1: 291780-302086 bp 2 RT 2: 318345-327177 bp Neighborhood of RT #1 [291780, 302088] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [318345, 327206] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 291780-292901 bp Feature: domain Description: COG3177 Location: 291798-292890 bp Feature: domain Description: COG3177 Location: 2 91798-2 92 890 bp Feature: gene Location: 293160-293297 bp Feature: gene Location: 293625-295310 bp Feature: RT Description: RVT_N Location: 293682-293922 bp Feature: RT Description: RVT_N Location: 2 93682 -2 9392 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293970-294606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93970-2 94606 bp Feature: domain Description: GIIM Note: maturase Location: 294660-294891 bp Feature: domain Description: GIIM Note: maturase Location: 2 94660-2 94891 bp Feature: domain Description: HNH Note: nucleases Location: 295143-295281 bp Feature: domain Description: HNH Note: nucleases Location: 2 95143-2 952 81 bp Feature: gene Location: 296391-300128 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 296499-297156 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 96499-2 97156 bp Feature: domain Description: PRK09776 Location: 297369-297840 bp Feature: domain Description: PRK09776 Location: 2 97369-2 97840 bp Feature: domain Description: PAS Location: 297897-298422 bp Feature: domain Description: PAS Location: 2 97897-2 9842 2 bp Feature: domain Description: PRK10060 Location: 298431-300078 bp Feature: domain Description: PRK10060 Location: 2 98431-300078 bp Feature: gene Location: 300235-302088 bp Feature: domain Description: PRK05658 Location: 300247-302086 bp Feature: domain Description: PRK05658 Location: 3002 47-302 086 bp Feature: gene Location: 318345-319559 bp Feature: domain Description: PRK10770 Location: 318357-319551 bp Feature: domain Description: PRK10770 Location: 318357-319551 bp Feature: gene Location: 319618-322401 bp Feature: domain Description: LptD Location: 319813-322387 bp Feature: domain Description: LptD Location: 319813-32 2 387 bp Feature: gene Location: 322534-324246 bp Feature: RT Description: RVT_N Location: 322591-322834 bp Feature: RT Description: RVT_N Location: 32 2 591-32 2 834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322879-323515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 2 879-32 3515 bp Feature: domain Description: YkfC Location: 323722-323875 bp Feature: domain Description: YkfC Location: 32 372 2 -32 3875 bp Feature: domain Description: HNH Note: nucleases Location: 324052-324190 bp Feature: domain Description: HNH Note: nucleases Location: 32 4052 -32 4190 bp Feature: gene Location: 325519-326535 bp Feature: domain Description: COG3178 Location: 325522-326521 bp Feature: domain Description: COG3178 Location: 32 552 2 -32 652 1 bp Feature: gene Location: 326532-327206 bp Feature: domain Description: NTP_transferase_like_1 Location: 326538-327177 bp Feature: domain Description: NTP_transferase_like_1 Location: 32 6538-32 7177 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)