myRT

myRT report for GCA_001375655.1_PRJEB8936_assembly_1

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Seq: CTEN01000004.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000004, whole genome shotgun sequence (435358 bp)
Overview 1 RT 1: 599-2181 bp 2 RT 2: 40697-47917 bp 3 RT 3: 321630-327689 bp 4 RT 4: 337239-341851 bp 5 RT 5: 382284-388755 bp Neighborhood of RT #1 [599, 2201] RVT-GII group_II_RT_mat Tra8 Neighborhood of RT #2 [40697, 47955] MtlA MtlA group_II_RT_mat RVT-GII PRK00331 sigpep_I_bact Neighborhood of RT #3 [321630, 327697] LiaF eMpr RVT-GII GIIM greA YceG Neighborhood of RT #4 [337239, 341856] NrdR group_II_RT_mat RVT-GII GIIM PerM OmpR Neighborhood of RT #5 [382284, 388766] Acetyltransf_1 PRK12378 RVT-GII GIIM group_II_RT_mat RVT-GII YdiL CarboxypepD_reg CarboxypepD_reg CarboxypepD_reg CarboxypepD_reg LPXTG_anchor Feature: gene Location: 599-1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-995 bp Feature: gene Location: 1169-1324 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1205-1313 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 205-1 31 3 bp Feature: gene Location: 1650-2201 bp Feature: domain Description: Tra8 Location: 1665-2181 bp Feature: domain Description: Tra8 Location: 1 665-21 81 bp Feature: gene Location: 40697-42475 bp Feature: domain Description: MtlA Location: 40709-42134 bp Feature: domain Description: MtlA Location: 40709-421 34 bp Feature: domain Description: MtlA Location: 42158-42470 bp Feature: domain Description: MtlA Location: 421 58-42470 bp Feature: gene Location: 43352-43816 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 43358-43652 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 43358-43652 bp Feature: gene Location: 43859-44584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44063-44579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44063-44579 bp Feature: gene Location: 45437-47251 bp Feature: domain Description: PRK00331 Location: 45440-47249 bp Feature: domain Description: PRK00331 Location: 45440-47249 bp Feature: gene Location: 47413-47955 bp Feature: domain Description: sigpep_I_bact Location: 47494-47917 bp Feature: domain Description: sigpep_I_bact Location: 47494-4791 7 bp Feature: gene Location: 321630-322325 bp Feature: domain Description: LiaF Location: 321633-322323 bp Feature: domain Description: LiaF Location: 321 633-322323 bp Feature: gene Location: 322883-324205 bp Feature: domain Description: eMpr Location: 323033-323759 bp Feature: domain Description: eMpr Location: 323033-323759 bp Feature: gene Location: 324545-325372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324548-324959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324548-324959 bp Feature: domain Description: GIIM Note: maturase Location: 325013-325226 bp Feature: domain Description: GIIM Note: maturase Location: 32501 3-325226 bp Feature: gene Location: 325711-326193 bp Feature: domain Description: greA Location: 325720-326182 bp Feature: domain Description: greA Location: 325720-3261 82 bp Feature: gene Location: 326273-327697 bp Feature: domain Description: YceG Location: 326579-327689 bp Feature: domain Description: YceG Location: 326579-327689 bp Feature: gene Location: 337239-337706 bp Feature: domain Description: NrdR Location: 337242-337701 bp Feature: domain Description: NrdR Location: 337242-337701 bp Feature: gene Location: 337878-338081 bp Feature: gene Location: 338245-339381 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 338281-338341 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 338281 -338341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338341-338923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338341 -338923 bp Feature: domain Description: GIIM Note: maturase Location: 338977-339190 bp Feature: domain Description: GIIM Note: maturase Location: 338977-3391 90 bp Feature: gene Location: 339852-340967 bp Feature: domain Description: PerM Location: 339891-340935 bp Feature: domain Description: PerM Location: 339891 -340935 bp Feature: gene Location: 341167-341856 bp Feature: domain Description: OmpR Location: 341179-341851 bp Feature: domain Description: OmpR Location: 341 1 79-341 851 bp Feature: gene Location: 382284-382766 bp Feature: domain Description: Acetyltransf_1 Location: 382347-382683 bp Feature: domain Description: Acetyltransf_1 Location: 382347-382683 bp Feature: gene Location: 383060-383776 bp Feature: domain Description: PRK12378 Location: 383063-383768 bp Feature: domain Description: PRK1 2378 Location: 383063-383768 bp Feature: gene Location: 384023-384937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384059-384524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384059-384524 bp Feature: domain Description: GIIM Note: maturase Location: 384578-384791 bp Feature: domain Description: GIIM Note: maturase Location: 384578-384791 bp Feature: gene Location: 385100-385564 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 385106-385400 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3851 06-385400 bp Feature: gene Location: 385607-385927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385610-385922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38561 0-385922 bp Feature: gene Location: 386426-387079 bp Feature: domain Description: YdiL Location: 386492-387062 bp Feature: domain Description: YdiL Location: 386492-387062 bp Feature: gene Location: 387219-388766 bp Feature: domain Description: CarboxypepD_reg Location: 387378-387561 bp Feature: domain Description: CarboxypepD_reg Location: 387378-387561 bp Feature: domain Description: CarboxypepD_reg Location: 387669-387813 bp Feature: domain Description: CarboxypepD_reg Location: 387669-38781 3 bp Feature: domain Description: CarboxypepD_reg Location: 387960-388152 bp Feature: domain Description: CarboxypepD_reg Location: 387960-3881 52 bp Feature: domain Description: CarboxypepD_reg Location: 388245-388425 bp Feature: domain Description: CarboxypepD_reg Location: 388245-388425 bp Feature: domain Description: LPXTG_anchor Location: 388659-388755 bp Feature: domain Description: LPXTG_anchor Location: 388659-388755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), Tra8 (COG2826), RVT-GII, MtlA (COG2213), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), sigpep_I_bact (TIGR02227), LiaF (COG4758), eMpr (COG3591), GIIM (pfam08388), greA (TIGR01462)
YceG (pfam02618), NrdR (COG1327), PerM (COG0628), OmpR (COG0745), Acetyltransf_1 (pfam00583), PRK12378 (YebC/PmpR family DNA-binding transcriptional regulator), YdiL (COG1266), CarboxypepD_reg (pfam13620), LPXTG_anchor (TIGR01167)

Seq: CTEN01000014.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000014, whole genome shotgun sequence (963 bp)
Overview 1 RT 1: 33-696 bp Neighborhood of RT #1 [33, 860] RVT-GII group_II_RT_mat Feature: gene Location: 33-353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-348 bp Feature: gene Location: 396-860 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 402-696 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 402 -696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: CTEN01000003.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000003, whole genome shotgun sequence (512440 bp)
Overview 1 RT 1: 29247-39724 bp 2 RT 2: 226528-236544 bp 3 RT 3: 446825-450947 bp Neighborhood of RT #1 [29247, 39735] AglD2 MprF PRK06193 RVT-GII GIIM DUF1722 PDDH group_II_RT_mat group_II_RT_mat RVT-GII DUF1722 PDDH Neighborhood of RT #2 [226528, 236573] TopA PBECR4 LPD25 MPTase-PolyVal RVT-GII HNHc dnaG Toprim_2 Neighborhood of RT #3 [446825, 450973] RsmG group_II_RT_mat RVT-GII UMPK PRK00142 Feature: gene Location: 29247-31757 bp Feature: domain Description: AglD2 Location: 29253-30132 bp Feature: domain Description: AglD2 Location: 29253 -3 013 2 bp Feature: domain Description: MprF Location: 30165-31704 bp Feature: domain Description: MprF Location: 3 0165-3 1704 bp Feature: gene Location: 31912-32658 bp Feature: domain Description: PRK06193 Location: 31951-32647 bp Feature: domain Description: PRK06193 Location: 3 1951-3 2647 bp Feature: gene Location: 32732-34009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32936-33551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 293 6-3 3 551 bp Feature: domain Description: GIIM Note: maturase Location: 33605-33818 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 605-3 3 818 bp Feature: gene Location: 34470-34952 bp Feature: domain Description: DUF1722 Location: 34611-34935 bp Feature: domain Description: DUF1722 Location: 3 4611-3 493 5 bp Feature: gene Location: 35351-36166 bp Feature: domain Description: PDDH Location: 35363-36155 bp Feature: domain Description: PDDH Location: 3 53 63 -3 6155 bp Feature: gene Location: 36163-36615 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36169-36463 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 6169-3 6463 bp Feature: gene Location: 36658-37242 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 36694-36754 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3 6694-3 6754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36754-37237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6754-3 723 7 bp Feature: gene Location: 37703-38185 bp Feature: domain Description: DUF1722 Location: 37844-38168 bp Feature: domain Description: DUF1722 Location: 3 7844-3 8168 bp Feature: gene Location: 38584-39735 bp Feature: domain Description: PDDH Location: 38593-39724 bp Feature: domain Description: PDDH Location: 3 8593 -3 9724 bp Feature: gene Location: 226528-228276 bp Feature: domain Description: TopA Location: 226540-228268 bp Feature: domain Description: TopA Location: 226540-228268 bp Feature: gene Location: 228436-232905 bp Feature: domain Description: PBECR4 Location: 230287-230833 bp Feature: domain Description: PBECR4 Location: 23 0287-23 083 3 bp Feature: domain Description: LPD25 Location: 231154-231499 bp Feature: domain Description: LPD25 Location: 23 1154-23 1499 bp Feature: domain Description: MPTase-PolyVal Location: 232549-232744 bp Feature: domain Description: MPTase-PolyVal Location: 23 2549-23 2744 bp Feature: gene Location: 233038-234843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233335-234037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 3 3 5-23 403 7 bp Feature: domain Description: HNHc Note: nucleases Location: 234592-234730 bp Feature: domain Description: HNHc Note: nucleases Location: 23 4592-23 473 0 bp Feature: gene Location: 234924-235208 bp Feature: gene Location: 235521-236573 bp Feature: domain Description: dnaG Location: 235602-235941 bp Feature: domain Description: dnaG Location: 23 5602-23 5941 bp Feature: domain Description: Toprim_2 Location: 236184-236544 bp Feature: domain Description: Toprim_2 Location: 23 6184-23 6544 bp Feature: gene Location: 446825-447538 bp Feature: domain Description: RsmG Location: 446849-447482 bp Feature: domain Description: RsmG Location: 446849-447482 bp Feature: gene Location: 447797-448261 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 447803-448097 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 447803 -448097 bp Feature: gene Location: 448304-448780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448310-448775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4483 10-448775 bp Feature: gene Location: 449263-449910 bp Feature: domain Description: UMPK Location: 449323-449875 bp Feature: domain Description: UMPK Location: 4493 23 -449875 bp Feature: gene Location: 449987-450973 bp Feature: domain Description: PRK00142 Location: 449996-450947 bp Feature: domain Description: PRK00142 Location: 449996-450947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AglD2 (COG0392), MprF (COG2898), PRK06193 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), DUF1722 (pfam08349), PDDH (cd08188), group_II_RT_mat (TIGR04416), TopA (COG0550), PBECR4 (pfam18813)
LPD25 (pfam18840), MPTase-PolyVal (pfam18818), HNHc (smart00507), dnaG (TIGR01391), Toprim_2 (pfam13155), RsmG (COG0357), UMPK (cd02023), PRK00142 (rhodanese-related sulfurtransferase)

Seq: CTEN01000002.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000002, whole genome shotgun sequence (526896 bp)
Overview 1 RT 1: 64956-69715 bp 2 RT 2: 285578-290850 bp Neighborhood of RT #1 [64956, 69715] thyA GIIM group_II_RT_mat RVT-GII GIIM ROK_glcA_fam Neighborhood of RT #2 [285578, 290924] GIIM RVT-GII pheT RimI Feature: gene Location: 64956-65795 bp Feature: domain Description: thyA Location: 64977-65793 bp Feature: domain Description: thyA Location: 64 977-65793 bp Feature: gene Location: 66164-66673 bp Feature: domain Description: GIIM Note: maturase Location: 66269-66482 bp Feature: domain Description: GIIM Note: maturase Location: 66269-664 82 bp Feature: gene Location: 66791-67882 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 66827-66887 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 66827-66887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66887-67469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66887-674 69 bp Feature: domain Description: GIIM Note: maturase Location: 67523-67736 bp Feature: domain Description: GIIM Note: maturase Location: 67523-67736 bp Feature: gene Location: 68328-69287 bp Feature: domain Description: ROK_glcA_fam Location: 68346-69279 bp Feature: domain Description: ROK_glcA_fam Location: 6834 6-69279 bp Feature: gene Location: 69374-69715 bp Feature: gene Location: 285578-285874 bp Feature: gene Location: 286149-286658 bp Feature: domain Description: GIIM Note: maturase Location: 286254-286467 bp Feature: domain Description: GIIM Note: maturase Location: 286254 -2864 67 bp Feature: gene Location: 286701-287426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286905-287421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286905-2874 21 bp Feature: gene Location: 287979-290384 bp Feature: domain Description: pheT Location: 287982-290382 bp Feature: domain Description: pheT Location: 287982-290382 bp Feature: gene Location: 290400-290924 bp Feature: domain Description: RimI Location: 290487-290850 bp Feature: domain Description: RimI Location: 2904 87-290850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thyA (PRK13821), GIIM (pfam08388), group_II_RT_mat (TIGR04416), RVT-GII, ROK_glcA_fam (TIGR00744), pheT (PRK09616), RimI (COG0456)

Seq: CTEN01000001.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000001, whole genome shotgun sequence (690419 bp)
Overview 1 RT 1: 571583-575759 bp Neighborhood of RT #1 [571583, 575761] RVT-GII GIIM GIIM BsYrkD-like_DUF156 Feature: gene Location: 571583-572407 bp Feature: gene Location: 572367-573239 bp Feature: gene Location: 573734-574966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 573938-574553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 73938-5 745 5 3 bp Feature: domain Description: GIIM Note: maturase Location: 574607-574820 bp Feature: domain Description: GIIM Note: maturase Location: 5 74607-5 74820 bp Feature: gene Location: 575082-575432 bp Feature: domain Description: GIIM Note: maturase Location: 575088-575241 bp Feature: domain Description: GIIM Note: maturase Location: 5 75 088-5 75 241 bp Feature: gene Location: 575501-575761 bp Feature: domain Description: BsYrkD-like_DUF156 Location: 575519-575759 bp Feature: domain Description: BsYrkD-like_DUF15 6 Location: 5 75 5 19-5 75 75 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), BsYrkD-like_DUF156 (cd10155)

Seq: CTEN01000007.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000007, whole genome shotgun sequence (56940 bp)
Overview 1 RT 1: 35485-39913 bp Neighborhood of RT #1 [35485, 40101] ATP-cone RVT-GII group_II_RT_mat UshA G5 Feature: gene Location: 35485-35823 bp Feature: domain Description: ATP-cone Location: 35488-35761 bp Feature: domain Description: ATP-cone Location: 35488-3576 1 bp Feature: gene Location: 35792-36013 bp Feature: gene Location: 36349-37074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36553-37069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 553-3706 9 bp Feature: gene Location: 37117-37581 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37123-37417 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 37123-37417 bp Feature: gene Location: 37972-40101 bp Feature: domain Description: UshA Location: 38008-39688 bp Feature: domain Description: UshA Location: 38008-396 88 bp Feature: domain Description: G5 Location: 39718-39913 bp Feature: domain Description: G5 Location: 39718-39913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ATP-cone (pfam03477), RVT-GII, group_II_RT_mat (TIGR04416), UshA (COG0737), G5 (pfam07501)

Seq: CTEN01000015.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000015, whole genome shotgun sequence (960 bp)
Overview 1 RT 1: 105-927 bp Neighborhood of RT #1 [105, 932] group_II_RT_mat RVT-GII Feature: gene Location: 105-569 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 111-405 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 111-405 bp Feature: gene Location: 612-932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615-927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 615-927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: CTEN01000013.1 Streptococcus sp. FF10 genome assembly PRJEB8936_assembly_1, contig CONTIG000013, whole genome shotgun sequence (967 bp)
Overview 1 RT 1: 106-787 bp Neighborhood of RT #1 [106, 933] RVT-GII GIIM Feature: gene Location: 106-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-520 bp Feature: domain Description: GIIM Note: maturase Location: 574-787 bp Feature: domain Description: GIIM Note: maturase Location: 574-78 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)