myRT

myRT report for GCA_001399545.1_ASM139954v1

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Seq: LKTV01000054.1 Variovorax paradoxus strain H084 H084_contig000054, whole genome shotgun sequence (52742 bp)
Overview 1 RT 1: 20836-30892 bp Neighborhood of RT #1 [20836, 30921] DUF1266 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons PaaI_thioesterase RIO1 Feature: gene Location: 20836-21600 bp Feature: domain Description: DUF1266 Location: 21022-21598 bp Feature: domain Description: DUF1 266 Location: 21 022-21 598 bp Feature: gene Location: 21828-24911 bp Feature: domain Description: HEAT_2 Location: 22089-22299 bp Feature: domain Description: HEAT_2 Location: 22089-22299 bp Feature: domain Description: HEAT_2 Location: 23364-23577 bp Feature: domain Description: HEAT_2 Location: 23364-23577 bp Feature: domain Description: HEAT_2 Location: 23625-23844 bp Feature: domain Description: HEAT_2 Location: 23625-23844 bp Feature: gene Location: 26895-28835 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27465-28083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27465-28083 bp Feature: gene Location: 28881-29465 bp Feature: domain Description: PaaI_thioesterase Location: 29064-29400 bp Feature: domain Description: PaaI_thioesterase Location: 29064-29400 bp Feature: gene Location: 30067-30921 bp Feature: domain Description: RIO1 Location: 30088-30892 bp Feature: domain Description: RIO1 Location: 30088-30892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1266 (pfam06889), HEAT_2 (pfam13646), RVT-Retrons, PaaI_thioesterase (cd03443), RIO1 (pfam01163)

Seq: LKTV01000094.1 Variovorax paradoxus strain H084 H084_contig000094, whole genome shotgun sequence (34709 bp)
Overview 1 RT 1: 17184-23937 bp Neighborhood of RT #1 [17184, 23957] LysR PBP2_Bug_TTT RVT-GII GIIM COG2936 COG3246 Feature: gene Location: 17184-18149 bp Feature: domain Description: LysR Location: 17187-18036 bp Feature: domain Description: LysR Location: 17187-18036 bp Feature: gene Location: 18258-19226 bp Feature: domain Description: PBP2_Bug_TTT Location: 18339-19206 bp Feature: domain Description: PBP2 _Bug_TTT Location: 18339-192 06 bp Feature: gene Location: 19654-21030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19993-20605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19993-2 0605 bp Feature: domain Description: GIIM Note: maturase Location: 20668-20872 bp Feature: domain Description: GIIM Note: maturase Location: 2 0668-2 0872 bp Feature: gene Location: 21245-23002 bp Feature: domain Description: COG2936 Location: 21296-22991 bp Feature: domain Description: COG2 936 Location: 2 12 96-2 2 991 bp Feature: gene Location: 23028-23957 bp Feature: domain Description: COG3246 Location: 23037-23937 bp Feature: domain Description: COG32 46 Location: 2 3037-2 3937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PBP2_Bug_TTT (cd07012), RVT-GII, GIIM (pfam08388), COG2936 (Predicted acyl esterase ), COG3246 (Uncharacterized conserved protein, DUF849 family )