myRT

myRT report for GCA_001399555.1_ASM139955v1

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Seq: LKTZ01000204.1 Variovorax paradoxus strain H112 H112_contig000204, whole genome shotgun sequence (11273 bp)
Overview 1 RT 1: 7997-10252 bp Neighborhood of RT #1 [7997, 10653] DUF2958 RVT-GII Intron_maturas2 Feature: gene Location: 7997-8317 bp Feature: gene Location: 8459-8671 bp Feature: domain Description: DUF2958 Location: 8462-8666 bp Feature: domain Description: DUF2958 Location: 8462-8666 bp Feature: gene Location: 8746-10653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9061-9892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9061 -9892 bp Feature: domain Description: Intron_maturas2 Location: 9976-10252 bp Feature: domain Description: Intron_maturas2 Location: 9976-1 0252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2958 (pfam11171), RVT-GII, Intron_maturas2 (pfam01348)

Seq: LKTZ01000094.1 Variovorax paradoxus strain H112 H112_contig000094, whole genome shotgun sequence (34775 bp)
Overview 1 RT 1: 17184-23937 bp Neighborhood of RT #1 [17184, 23957] LysR PBP2_Bug_TTT RVT-GII GIIM COG2936 COG3246 Feature: gene Location: 17184-18149 bp Feature: domain Description: LysR Location: 17187-18036 bp Feature: domain Description: LysR Location: 17187-18036 bp Feature: gene Location: 18258-19226 bp Feature: domain Description: PBP2_Bug_TTT Location: 18339-19206 bp Feature: domain Description: PBP2 _Bug_TTT Location: 18339-192 06 bp Feature: gene Location: 19654-21030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19993-20605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19993-2 0605 bp Feature: domain Description: GIIM Note: maturase Location: 20668-20872 bp Feature: domain Description: GIIM Note: maturase Location: 2 0668-2 0872 bp Feature: gene Location: 21245-23002 bp Feature: domain Description: COG2936 Location: 21296-22991 bp Feature: domain Description: COG2 936 Location: 2 12 96-2 2 991 bp Feature: gene Location: 23028-23957 bp Feature: domain Description: COG3246 Location: 23037-23937 bp Feature: domain Description: COG32 46 Location: 2 3037-2 3937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PBP2_Bug_TTT (cd07012), RVT-GII, GIIM (pfam08388), COG2936 (Predicted acyl esterase ), COG3246 (Uncharacterized conserved protein, DUF849 family )

Seq: LKTZ01000184.1 Variovorax paradoxus strain H112 H112_contig000184, whole genome shotgun sequence (15802 bp)
Overview 1 RT 1: 11772-15046 bp Neighborhood of RT #1 [11772, 15798] RIO1 PaaI_thioesterase RVT-Retrons Feature: gene Location: 11772-12626 bp Feature: domain Description: RIO1 Location: 11793-12597 bp Feature: domain Description: RIO1 Location: 11793 -12597 bp Feature: gene Location: 13228-13812 bp Feature: domain Description: PaaI_thioesterase Location: 13411-13747 bp Feature: domain Description: PaaI_thioesterase Location: 13 411-13 747 bp Feature: gene Location: 13858-15798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14428-15046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14428-15046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RIO1 (pfam01163), PaaI_thioesterase (cd03443), RVT-Retrons