myRT

myRT report for GCA_001399565.1_ASM139956v1

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Seq: LKTW01000077.1 Variovorax paradoxus strain H090 H090_contig000077, whole genome shotgun sequence (43270 bp)
Overview 1 RT 1: 21822-29856 bp Neighborhood of RT #1 [21822, 30923] RIO1 PaaI_thioesterase RVT-Retrons HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 21822-22676 bp Feature: domain Description: RIO1 Location: 21843-22647 bp Feature: domain Description: RIO1 Location: 21 843-22647 bp Feature: gene Location: 23278-23862 bp Feature: domain Description: PaaI_thioesterase Location: 23461-23797 bp Feature: domain Description: PaaI_thioesterase Location: 23461 -23797 bp Feature: gene Location: 23908-25848 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24478-25096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24478-25096 bp Feature: gene Location: 26128-27843 bp Feature: gene Location: 27840-30923 bp Feature: domain Description: HEAT_2 Location: 28101-28311 bp Feature: domain Description: HEAT_2 Location: 281 01 -2831 1 bp Feature: domain Description: HEAT_2 Location: 29376-29589 bp Feature: domain Description: HEAT_2 Location: 29376-29589 bp Feature: domain Description: HEAT_2 Location: 29637-29856 bp Feature: domain Description: HEAT_2 Location: 29637-29856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RIO1 (pfam01163), PaaI_thioesterase (cd03443), RVT-Retrons, HEAT_2 (pfam13646)

Seq: LKTW01000098.1 Variovorax paradoxus strain H090 H090_contig000098, whole genome shotgun sequence (35124 bp)
Overview 1 RT 1: 17533-24286 bp Neighborhood of RT #1 [17533, 24306] LysR PBP2_Bug_TTT RVT-GII GIIM COG2936 COG3246 Feature: gene Location: 17533-18498 bp Feature: domain Description: LysR Location: 17536-18385 bp Feature: domain Description: LysR Location: 17536-18385 bp Feature: gene Location: 18607-19575 bp Feature: domain Description: PBP2_Bug_TTT Location: 18688-19555 bp Feature: domain Description: PBP2 _Bug_TTT Location: 18688-19555 bp Feature: gene Location: 20003-21379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20342-20954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0342 -2 0954 bp Feature: domain Description: GIIM Note: maturase Location: 21017-21221 bp Feature: domain Description: GIIM Note: maturase Location: 2 1017-2 12 2 1 bp Feature: gene Location: 21594-23351 bp Feature: domain Description: COG2936 Location: 21645-23340 bp Feature: domain Description: COG2 936 Location: 2 1645-2 3340 bp Feature: gene Location: 23377-24306 bp Feature: domain Description: COG3246 Location: 23386-24286 bp Feature: domain Description: COG32 46 Location: 2 3386-2 42 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PBP2_Bug_TTT (cd07012), RVT-GII, GIIM (pfam08388), COG2936 (Predicted acyl esterase ), COG3246 (Uncharacterized conserved protein, DUF849 family )