myRT

myRT report for GCA_001399625.1_ASM139962v1

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Seq: LKTY01000069.1 Variovorax paradoxus strain H108 H108_contig000069, whole genome shotgun sequence (43130 bp)
Overview 1 RT 1: 12207-21279 bp Neighborhood of RT #1 [12207, 21308] HEAT_2 HEAT_2 HEAT_2 RVT-Retrons PaaI_thioesterase RIO1 Feature: gene Location: 12207-15290 bp Feature: domain Description: HEAT_2 Location: 12468-12678 bp Feature: domain Description: HEAT_2 Location: 1 2468-1 2678 bp Feature: domain Description: HEAT_2 Location: 13743-13956 bp Feature: domain Description: HEAT_2 Location: 1 3743-1 3956 bp Feature: domain Description: HEAT_2 Location: 14004-14223 bp Feature: domain Description: HEAT_2 Location: 1 4004-1 4223 bp Feature: gene Location: 15287-17002 bp Feature: gene Location: 17282-19222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17852-18470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 7852-1 8470 bp Feature: gene Location: 19268-19852 bp Feature: domain Description: PaaI_thioesterase Location: 19451-19787 bp Feature: domain Description: PaaI_thioesterase Location: 1 9451 -1 9787 bp Feature: gene Location: 20454-21308 bp Feature: domain Description: RIO1 Location: 20475-21279 bp Feature: domain Description: RIO1 Location: 20475-21 279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), RVT-Retrons, PaaI_thioesterase (cd03443), RIO1 (pfam01163)

Seq: LKTY01000095.1 Variovorax paradoxus strain H108 H108_contig000095, whole genome shotgun sequence (34754 bp)
Overview 1 RT 1: 10798-17458 bp Neighborhood of RT #1 [10798, 17571] COG3246 COG2936 RVT-GII GIIM PBP2_Bug_TTT LysR Feature: gene Location: 10798-11727 bp Feature: domain Description: COG3246 Location: 10807-11707 bp Feature: domain Description: COG32 46 Location: 10807-11707 bp Feature: gene Location: 11753-13510 bp Feature: domain Description: COG2936 Location: 11804-13499 bp Feature: domain Description: COG2 936 Location: 11804-13499 bp Feature: gene Location: 13725-15101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14064-14676 bp Feature: domain Description: GIIM Note: maturase Location: 14739-14943 bp Feature: domain Description: GIIM Note: maturase Location: 14739-14943 bp Feature: gene Location: 15529-16482 bp Feature: domain Description: PBP2_Bug_TTT Location: 15595-16462 bp Feature: domain Description: PBP2 _Bug_TTT Location: 15595-16462 bp Feature: gene Location: 16606-17571 bp Feature: domain Description: LysR Location: 16609-17458 bp Feature: domain Description: LysR Location: 16609-17458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3246 (Uncharacterized conserved protein, DUF849 family ), COG2936 (Predicted acyl esterase ), RVT-GII, GIIM (pfam08388), PBP2_Bug_TTT (cd07012), LysR (COG0583)