myRT

myRT report for GCA_001399675.1_ASM139967v1

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Seq: LJCO01000035.1 Alicyclobacillus ferrooxydans strain TC-34 contig_53, whole genome shotgun sequence (15782 bp)
Overview 1 RT 1: 10031-15579 bp Neighborhood of RT #1 [10031, 15579] FrnE thioredoxin RVT_N RVT-GII PinE Zn_ribbon_recom Recombinase HTH_17 Feature: gene Location: 10031-10606 bp Ori: KPV44329.1 Feature: domain Description: FrnE Location: 10043-10601 bp Feature: domain Description: FrnE Location: 1 0043-1 0601 bp Feature: gene Location: 10626-10943 bp Ori: KPV44330.1 Feature: domain Description: thioredoxin Location: 10650-10935 bp Feature: domain Description: thioredoxin Location: 1 0650-1 0935 bp Feature: gene Location: 12564-12983 bp Ori: KPV44333.1 Feature: domain Description: RVT_N Location: 12630-12858 bp Feature: domain Description: RVT_N Location: 1 2630-1 2858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12906-12954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2906-1 2954 bp Feature: gene Location: 13022-15064 bp Ori: KPV44331.1 Feature: domain Description: PinE Location: 13073-13694 bp Feature: domain Description: PinE Location: 1 3073-1 3694 bp Feature: domain Description: Zn_ribbon_recom Location: 14018-14192 bp Feature: domain Description: Zn_ribbon_recom Location: 1 401 8-1 41 92 bp Feature: domain Description: Recombinase Location: 14711-14840 bp Feature: domain Description: Recombinase Location: 1 471 1 -1 4840 bp Feature: domain Description: HTH_17 Location: 14885-14966 bp Feature: domain Description: HTH_1 7 Location: 1 4885-1 4966 bp Feature: gene Location: 15217-15579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FrnE (COG2761), thioredoxin (TIGR01068), RVT_N (pfam13655), RVT-GII, PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_17 (pfam12728)

Seq: LJCO01000054.1 Alicyclobacillus ferrooxydans strain TC-34 contig_17, whole genome shotgun sequence (101304 bp)
Overview 1 RT 1: 91272-96334 bp Neighborhood of RT #1 [91272, 96384] RVT-GII GIIM PRK10809 HTH_42 Feature: gene Location: 91272-91451 bp Feature: gene Location: 91861-92097 bp Feature: gene Location: 92918-94462 bp Ori: KPV43277.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93026-93698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9302 6-93698 bp Feature: domain Description: GIIM Note: maturase Location: 93812-93965 bp Feature: domain Description: GIIM Note: maturase Location: 93812 -93965 bp Feature: gene Location: 94675-95181 bp Ori: KPV43303.1 Feature: domain Description: PRK10809 Location: 94693-95176 bp Feature: domain Description: PRK10809 Location: 94693-95176 bp Feature: gene Location: 95362-96384 bp Ori: KPV43278.1 Feature: domain Description: HTH_42 Location: 95485-96334 bp Feature: domain Description: HTH_42 Location: 95485-96334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10809 (30S ribosomal protein S5 alanine N-acetyltransferase), HTH_42 (pfam06224)

Seq: LJCO01000032.1 Alicyclobacillus ferrooxydans strain TC-34 contig_62, whole genome shotgun sequence (8098 bp)
Overview 1 RT 1: 3092-7424 bp Neighborhood of RT #1 [3092, 7424] PRK12335 RVT-GII GIIM ISOPREN_C2_like ISOPREN_C2_like Feature: gene Location: 3092-3718 bp Ori: KPV44504.1 Feature: domain Description: PRK12335 Location: 3215-3713 bp Feature: domain Description: PRK123 3 5 Location: 3 215-3 713 bp Feature: gene Location: 3861-4073 bp Feature: gene Location: 4264-5601 bp Ori: KPV44506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4570-5206 bp Feature: domain Description: GIIM Note: maturase Location: 5284-5509 bp Feature: domain Description: GIIM Note: maturase Location: 5284-5509 bp Feature: gene Location: 6243-7037 bp Ori: KPV44507.1 Feature: domain Description: ISOPREN_C2_like Location: 6327-6819 bp Feature: domain Description: ISOPREN_C2_like Location: 63 27-6819 bp Feature: domain Description: ISOPREN_C2_like Location: 6849-7014 bp Feature: domain Description: ISOPREN_C2_like Location: 6849-7014 bp Feature: gene Location: 7194-7424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12335 (tellurite resistance protein TehB; Provisional), RVT-GII, GIIM (pfam08388), ISOPREN_C2_like (cl08267)

Seq: LJCO01000084.1 Alicyclobacillus ferrooxydans strain TC-34 contig_65, whole genome shotgun sequence (4683 bp)
Overview 1 RT 1: 2452-4474 bp Neighborhood of RT #1 [2452, 4488] RVT-GII GIIM DrsE Feature: gene Location: 2452-3711 bp Ori: KPV42082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644-3265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264 4 -3265 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3532 bp Feature: domain Description: GIIM Note: maturase Location: 3313-3532 bp Feature: gene Location: 4132-4488 bp Ori: KPV42081.1 Feature: domain Description: DrsE Location: 4144-4474 bp Feature: domain Description: DrsE Location: 4 14 4 -4 4 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DrsE (pfam02635)

Seq: LJCO01000039.1 Alicyclobacillus ferrooxydans strain TC-34 contig_93, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 410-1646 bp Neighborhood of RT #1 [410, 1822] RVT-GII GIIM Feature: gene Location: 410-1822 bp Ori: KPV44212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 758-1376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 8-1376 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1646 bp Feature: domain Description: GIIM Note: maturase Location: 1424-1646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)