myRT

myRT report for GCA_001399985.1_ASM139998v1

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Seq: LJSO01000012.1 Pseudoalteromonas sp. P1-8 AN213_contig000012, whole genome shotgun sequence (124728 bp)
Overview 1 RT 1: 41802-49454 bp Neighborhood of RT #1 [41802, 49454] NTR_TIMP_like DUF2971 RVT_N RVT-GII GIIM SbcC SbcC Feature: gene Location: 41802-42239 bp Feature: domain Description: NTR_TIMP_like Location: 41856-42171 bp Feature: domain Description: NTR_TIMP_like Location: 41 856-421 71 bp Feature: gene Location: 42368-43285 bp Feature: domain Description: DUF2971 Location: 42605-42860 bp Feature: domain Description: DUF2971 Location: 42605-42860 bp Feature: gene Location: 43873-45342 bp Feature: RT Description: RVT_N Location: 43918-44161 bp Feature: RT Description: RVT_N Location: 4391 8-441 61 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44206-44833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44206-44833 bp Feature: domain Description: GIIM Note: maturase Location: 44890-45118 bp Feature: domain Description: GIIM Note: maturase Location: 44890-451 1 8 bp Feature: gene Location: 46139-48592 bp Feature: domain Description: SbcC Location: 46154-48056 bp Feature: domain Description: SbcC Location: 461 54-48056 bp Feature: domain Description: SbcC Location: 48269-48518 bp Feature: domain Description: SbcC Location: 48269-4851 8 bp Feature: gene Location: 48585-49454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTR_TIMP_like (cd03577), DUF2971 (pfam11185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SbcC (COG0419)

Seq: LJSO01000004.1 Pseudoalteromonas sp. P1-8 AN213_contig000004, whole genome shotgun sequence (353281 bp)
Overview 1 RT 1: 34893-45689 bp Neighborhood of RT #1 [34893, 45697] Tn7_Tnp_TnsA_N RVT-Retrons PRK05367 Feature: gene Location: 34893-35753 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 35118-35433 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 35118-35433 bp Feature: gene Location: 36322-37041 bp Feature: gene Location: 37019-38257 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37178-37808 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37178-37808 bp Feature: gene Location: 38756-42556 bp Feature: gene Location: 42806-45697 bp Feature: domain Description: PRK05367 Location: 42830-45689 bp Feature: domain Description: PRK05367 Location: 42 830-45689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tn7_Tnp_TnsA_N (pfam08722), RVT-Retrons, PRK05367 (aminomethyl-transferring glycine dehydrogenase)