myRT

myRT report for GCA_001401005.1_PppICMP4048

Download annotations/find similar RTs

Seq: LJRB01000136.1 Pseudomonas syringae pv. papulans strain ICMP4048 PppICMP4048_Contig_110, whole genome shotgun sequence (15091 bp)
Overview 1 RT 1: 4-2241 bp Neighborhood of RT #1 [4, 2241] RVT-UG17 T6SS_HCP Feature: gene Location: 4-1023 bp Ori: KPY30357.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 274-886 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 274-886 bp Feature: gene Location: 1405-1899 bp Ori: KPY30375.1 Feature: domain Description: T6SS_HCP Location: 1423-1816 bp Feature: domain Description: T6SS_HCP Location: 1 423-1 81 6 bp Feature: gene Location: 1963-2241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, T6SS_HCP (pfam05638)

Seq: LJRB01000193.1 Pseudomonas syringae pv. papulans strain ICMP4048 PppICMP4048_Contig_45, whole genome shotgun sequence (17662 bp)
Overview 1 RT 1: 565-5821 bp Neighborhood of RT #1 [565, 5904] RVT-Retrons KTSC AcrR Feature: gene Location: 565-789 bp Feature: gene Location: 1052-2053 bp Feature: gene Location: 2652-4511 bp Ori: KPY27793.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2931-3558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 931-3558 bp Feature: gene Location: 4828-5028 bp Ori: KPY27790.1 Feature: domain Description: KTSC Location: 4849-5020 bp Feature: domain Description: KTSC Location: 4849-502 0 bp Feature: gene Location: 5269-5904 bp Ori: KPY27795.1 Feature: domain Description: AcrR Location: 5317-5821 bp Feature: domain Description: AcrR Location: 5317-582 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, KTSC (pfam13619), AcrR (COG1309)

Seq: LJRB01000273.1 Pseudomonas syringae pv. papulans strain ICMP4048 PppICMP4048_Contig_218, whole genome shotgun sequence (3056 bp)
Overview 1 RT 1: 645-2155 bp Neighborhood of RT #1 [645, 2598] SLATT_5 RVT-G2L4 Feature: gene Location: 645-1280 bp Ori: KPY24090.1 Feature: domain Description: SLATT_5 Location: 648-1248 bp Feature: domain Description: SLATT_5 Location: 648-1248 bp Feature: gene Location: 1351-2598 bp Ori: KPY24089.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1564-2155 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 1564-2155 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-G2L4

Seq: LJRB01000026.1 Pseudomonas syringae pv. papulans strain ICMP4048 PppICMP4048_Contig_7, whole genome shotgun sequence (127633 bp)
Overview 1 RT 1: 1-6609 bp Neighborhood of RT #1 [1, 6746] RVT-UG15 PRK11453 HxlR Feature: gene Location: 1-1072 bp Feature: gene Location: 2846-4495 bp Ori: KPY35534.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3293-3704 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3293-3704 bp Feature: gene Location: 5075-5971 bp Ori: KPY35537.1 Feature: domain Description: PRK11453 Location: 5099-5930 bp Feature: domain Description: PRK114 53 Location: 5099-5930 bp Feature: gene Location: 6291-6746 bp Ori: KPY35539.1 Feature: domain Description: HxlR Location: 6318-6609 bp Feature: domain Description: HxlR Location: 6318-6609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, PRK11453 (O-acetylserine/cysteine exporter), HxlR (pfam01638)