myRT

myRT report for GCA_001401735.1_ASM140173v1

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Seq: LKTU01000085.1 Variovorax paradoxus strain H061 H061_contig000085, whole genome shotgun sequence (34775 bp)
Overview 1 RT 1: 17184-23937 bp Neighborhood of RT #1 [17184, 23957] LysR PBP2_Bug_TTT RVT-GII GIIM COG2936 COG3246 Feature: gene Location: 17184-18149 bp Feature: domain Description: LysR Location: 17187-18036 bp Feature: domain Description: LysR Location: 1 71 87-1 8036 bp Feature: gene Location: 18258-19226 bp Feature: domain Description: PBP2_Bug_TTT Location: 18339-19206 bp Feature: domain Description: PBP2_Bug_TTT Location: 1 8339-1 9206 bp Feature: gene Location: 19654-21030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19993-20605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9993-20605 bp Feature: domain Description: GIIM Note: maturase Location: 20668-20872 bp Feature: domain Description: GIIM Note: maturase Location: 20668-20872 bp Feature: gene Location: 21245-23002 bp Feature: domain Description: COG2936 Location: 21296-22991 bp Feature: domain Description: COG2936 Location: 21 296-22991 bp Feature: gene Location: 23028-23957 bp Feature: domain Description: COG3246 Location: 23037-23937 bp Feature: domain Description: COG3246 Location: 23037-23937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PBP2_Bug_TTT (cd07012), RVT-GII, GIIM (pfam08388), COG2936 (Predicted acyl esterase ), COG3246 (Uncharacterized conserved protein, DUF849 family )

Seq: LKTU01000102.1 Variovorax paradoxus strain H061 H061_contig000102, whole genome shotgun sequence (25852 bp)
Overview 1 RT 1: 5-4002 bp Neighborhood of RT #1 [5, 4031] RVT-Retrons PaaI_thioesterase RIO1 Feature: gene Location: 5-1945 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 575-1193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 575-1193 bp Feature: gene Location: 1991-2575 bp Feature: domain Description: PaaI_thioesterase Location: 2174-2510 bp Feature: domain Description: PaaI_thioesterase Location: 2 174-2 510 bp Feature: gene Location: 3177-4031 bp Feature: domain Description: RIO1 Location: 3198-4002 bp Feature: domain Description: RIO1 Location: 3198-4002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PaaI_thioesterase (cd03443), RIO1 (pfam01163), RVT-Retrons