myRT

myRT report for GCA_001401795.1_ASM140179v1

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Seq: LKDX01000018.1 Pseudoalteromonas sp. P1-26 AN394_contig000018, whole genome shotgun sequence (83905 bp)
Overview 1 RT 1: 15774-23019 bp Neighborhood of RT #1 [15774, 23019] PRK05151 PRK11059 RVT-Retrons Feature: gene Location: 15774-16355 bp Feature: domain Description: PRK05151 Location: 15777-16350 bp Feature: domain Description: PRK051 51 Location: 1 5777-1 6350 bp Feature: gene Location: 16531-18474 bp Feature: domain Description: PRK11059 Location: 17221-18466 bp Feature: domain Description: PRK1 1 059 Location: 1 7221 -1 8466 bp Feature: gene Location: 19848-21071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20013-20625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2001 3-20625 bp Feature: gene Location: 21061-21786 bp Feature: gene Location: 22282-23019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05151 (electron transport complex protein RsxA; Provisional), PRK11059 (regulatory protein CsrD; Provisional), RVT-Retrons

Seq: LKDX01000002.1 Pseudoalteromonas sp. P1-26 AN394_contig000002, whole genome shotgun sequence (285291 bp)
Overview 1 RT 1: 138951-143200 bp Neighborhood of RT #1 [138951, 143200] HNH_4 RVT-Retrons TIR_2 TIR_2 Feature: gene Location: 138951-139361 bp Feature: domain Description: HNH_4 Location: 138978-139152 bp Feature: domain Description: HNH_4 Location: 138978-139152 bp Feature: gene Location: 139393-139866 bp Feature: gene Location: 140107-141693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140359-140968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 140359-140968 bp Feature: domain Description: TIR_2 Location: 141301-141682 bp Feature: domain Description: TIR_2 Location: 141301-141682 bp Feature: gene Location: 141820-142710 bp Feature: domain Description: TIR_2 Location: 142105-142411 bp Feature: domain Description: TIR_2 Location: 142 105-142 411 bp Feature: gene Location: 143009-143200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_4 (pfam13395), RVT-Retrons, TIR_2 (pfam13676)

Seq: LKDX01000080.1 Pseudoalteromonas sp. P1-26 AN394_contig000080, whole genome shotgun sequence (8883 bp)
Overview 1 RT 1: 316-4097 bp Neighborhood of RT #1 [316, 4369] InsE PHA02517 RVT-GII GIIM PHA02517 arc_metj Feature: gene Location: 316-636 bp Feature: domain Description: InsE Location: 325-628 bp Feature: domain Description: InsE Location: 3 25-628 bp Feature: gene Location: 822-1079 bp Feature: domain Description: PHA02517 Location: 828-1056 bp Feature: domain Description: PHA02517 Location: 828-1056 bp Feature: gene Location: 1718-3247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991-2723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1991-2723 bp Feature: domain Description: GIIM Note: maturase Location: 2837-2996 bp Feature: domain Description: GIIM Note: maturase Location: 283 7-2996 bp Feature: gene Location: 3424-3816 bp Feature: domain Description: PHA02517 Location: 3427-3799 bp Feature: domain Description: PHA02517 Location: 3 427-3 799 bp Feature: gene Location: 3989-4369 bp Feature: domain Description: arc_metj Location: 3992-4097 bp Feature: domain Description: arc_metj Location: 3 992-4097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsE (COG2963), arc_metj (LOAD_arc_metj), PHA02517 (putative transposase OrfB; Reviewed)