myRT

myRT report for GCA_001402795.1_ASM140279v1

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Seq: LIRE01000743.1 Pseudanabaena sp. 'Roaring Creek' contig-177, whole genome shotgun sequence (53046 bp)
Overview 1 RT 1: 30011-34082 bp Neighborhood of RT #1 [30011, 34082] SSB_OBF RVT_N RVT-GII GIIM McrA Feature: gene Location: 30011-30397 bp Feature: gene Location: 30511-30918 bp Feature: domain Description: SSB_OBF Location: 30535-30847 bp Feature: domain Description: SSB_OBF Location: 30535-30847 bp Feature: gene Location: 31466-33007 bp Feature: domain Description: RVT_N Location: 31502-31748 bp Feature: domain Description: RVT_N Location: 31 502-31 748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31799-32423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 799-32423 bp Feature: domain Description: GIIM Note: maturase Location: 32480-32672 bp Feature: domain Description: GIIM Note: maturase Location: 32480-32672 bp Feature: domain Description: McrA Location: 32696-32978 bp Feature: domain Description: McrA Location: 32696-32978 bp Feature: gene Location: 33205-33642 bp Feature: gene Location: 33771-34082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: LIRE01000230.1 Pseudanabaena sp. 'Roaring Creek' contig-390, whole genome shotgun sequence (32517 bp)
Overview 1 RT 1: 1984-6722 bp 2 RT 2: 12770-16187 bp Neighborhood of RT #1 [1984, 9220] PLDc_N TPR TPR_8 RVT-Retrons WGR_DNA_ligase HEAT_2 Neighborhood of RT #2 [12770, 16234] KTSC Uma2 group_II_RT_mat RVT-UG13 Tox-PL-2 Feature: gene Location: 1984-2139 bp Feature: gene Location: 2304-3065 bp Feature: domain Description: PLDc_N Location: 2358-2472 bp Feature: domain Description: PLDc_N Location: 2 358-2 472 bp Feature: domain Description: TPR Location: 2595-2874 bp Feature: domain Description: TPR Location: 2 595-2 874 bp Feature: domain Description: TPR_8 Location: 2898-2967 bp Feature: domain Description: TPR_8 Location: 2 898-2 967 bp Feature: gene Location: 3292-4728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3838-4456 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3838-4456 bp Feature: gene Location: 5237-5914 bp Feature: gene Location: 6017-9220 bp Feature: domain Description: WGR_DNA_ligase Location: 6032-6257 bp Feature: domain Description: WGR_DNA_ligase Location: 6032 -62 57 bp Feature: domain Description: HEAT_2 Location: 6521-6722 bp Feature: domain Description: HEAT_2 Location: 652 1-672 2 bp Feature: gene Location: 12770-13027 bp Feature: domain Description: KTSC Location: 12821-12992 bp Feature: domain Description: KTSC Location: 12 82 1-12 992 bp Feature: gene Location: 13173-13745 bp Feature: domain Description: Uma2 Location: 13206-13734 bp Feature: domain Description: Uma2 Location: 132 06-13734 bp Feature: gene Location: 13850-15697 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 14015-14213 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 14015-142 13 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 14294-14759 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 142 94-14759 bp Feature: gene Location: 15771-15956 bp Feature: gene Location: 15977-16234 bp Feature: domain Description: Tox-PL-2 Location: 15983-16187 bp Feature: domain Description: Tox-PL-2 Location: 15983-16187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_N (pfam13396), TPR (smart00028), TPR_8 (pfam13181), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), KTSC (pfam13619), Uma2 (pfam05685), group_II_RT_mat (TIGR04416), RVT-UG13
Tox-PL-2 (pfam15643)