myRT

myRT report for GCA_001403575.1_Ihuella_massiliensis

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Seq: LN877920.1 Ruminococcaceae bacterium cv2 genome assembly Ihuella massiliensis, scaffold scaffold00022, whole genome shotgun sequence (1116178 bp)
Overview 1 RT 1: 35092-40738 bp Neighborhood of RT #1 [35092, 40797] dnaG DUF3991 Toprim_2 VirD4 RVT_N RVT-GII GIIM HNH T4SS-DNA_transf HTH_36 Feature: gene Location: 35092-36492 bp Feature: domain Description: dnaG Location: 35203-35389 bp Feature: domain Description: dnaG Location: 35203-35389 bp Feature: domain Description: DUF3991 Location: 35422-35656 bp Feature: domain Description: DUF3991 Location: 35422-35656 bp Feature: domain Description: Toprim_2 Location: 35680-35953 bp Feature: domain Description: Toprim_2 Location: 35680-35953 bp Feature: gene Location: 36507-37823 bp Feature: domain Description: VirD4 Location: 36615-37800 bp Feature: domain Description: VirD4 Location: 3661 5-37800 bp Feature: gene Location: 38347-40026 bp Feature: RT Description: RVT_N Location: 38425-38659 bp Feature: RT Description: RVT_N Location: 38425-38659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38713-39373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3871 3-39373 bp Feature: domain Description: GIIM Note: maturase Location: 39424-39661 bp Feature: domain Description: GIIM Note: maturase Location: 39424-39661 bp Feature: domain Description: HNH Note: nucleases Location: 39874-39991 bp Feature: domain Description: HNH Note: nucleases Location: 39874-39991 bp Feature: gene Location: 39863-40546 bp Feature: domain Description: T4SS-DNA_transf Location: 40142-40376 bp Feature: domain Description: T4SS-DNA_transf Location: 401 42-40376 bp Feature: gene Location: 40543-40797 bp Feature: domain Description: HTH_36 Location: 40582-40738 bp Feature: domain Description: HTH_36 Location: 40582-40738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), DUF3991 (pfam13154), Toprim_2 (pfam13155), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), T4SS-DNA_transf (pfam02534), HTH_36 (pfam13730)