myRT

myRT report for GCA_001403615.1_Desnusiella_massiliensis

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Seq: LN879454.1 Clostridiaceae bacterium mt10 genome assembly Desnusiella massiliensis, scaffold scaffold00011, whole genome shotgun sequence (696544 bp)
Overview 1 RT 1: 441141-444613 bp 2 RT 2: 683606-688961 bp Neighborhood of RT #1 [441141, 444613] RimL RVT-GII GIIM Neighborhood of RT #2 [683606, 688972] RVT-GII GIIM E_set_CDase_PDE_N AmyAc_CMD glgC Feature: gene Location: 441141-441683 bp Feature: domain Description: RimL Location: 441156-441663 bp Feature: domain Description: RimL Location: 441 1 56-441 663 bp Feature: gene Location: 441676-442137 bp Feature: gene Location: 443004-444065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443301-443934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443301 -443934 bp Feature: gene Location: 444094-444294 bp Feature: domain Description: GIIM Note: maturase Location: 444097-444232 bp Feature: domain Description: GIIM Note: maturase Location: 444097-444232 bp Feature: gene Location: 444392-444613 bp Feature: gene Location: 683606-683746 bp Feature: gene Location: 683903-684091 bp Feature: gene Location: 684098-685390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684395-685028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684395-685028 bp Feature: domain Description: GIIM Note: maturase Location: 685112-685337 bp Feature: domain Description: GIIM Note: maturase Location: 6851 1 2-685337 bp Feature: gene Location: 685670-687502 bp Feature: domain Description: E_set_CDase_PDE_N Location: 685682-686021 bp Feature: domain Description: E_set_CDase_PDE_N Location: 685682-686021 bp Feature: domain Description: AmyAc_CMD Location: 686060-687263 bp Feature: domain Description: AmyAc_CMD Location: 686060-687263 bp Feature: gene Location: 687827-688972 bp Feature: domain Description: glgC Location: 687836-688961 bp Feature: domain Description: glgC Location: 687836-688961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), RVT-GII, GIIM (pfam08388), E_set_CDase_PDE_N (cd02857), AmyAc_CMD (cd11338), glgC (TIGR02091)

Seq: LN879455.1 Clostridiaceae bacterium mt10 genome assembly Desnusiella massiliensis, scaffold scaffold00012, whole genome shotgun sequence (878339 bp)
Overview 1 RT 1: 105833-108077 bp 2 RT 2: 114492-117273 bp 3 RT 3: 426447-428579 bp Neighborhood of RT #1 [105833, 108448] RVT-GII GIIM Glyco_tranf_GTA_type Neighborhood of RT #2 [114492, 117278] RVT-GII GIIM RfbD Neighborhood of RT #3 [426447, 428644] RVT-GII GIIM COG5418 Feature: gene Location: 105833-105973 bp Feature: gene Location: 106130-106318 bp Feature: gene Location: 106325-106795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106622-106769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10662 2 -106769 bp Feature: gene Location: 106908-107183 bp Feature: domain Description: GIIM Note: maturase Location: 106911-107130 bp Feature: domain Description: GIIM Note: maturase Location: 106911-107130 bp Feature: gene Location: 107504-108448 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 107525-108077 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 10752 5-108077 bp Feature: gene Location: 114492-114632 bp Feature: gene Location: 114789-114977 bp Feature: gene Location: 114984-115760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115281-115749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152 81-115749 bp Feature: gene Location: 115873-116148 bp Feature: domain Description: GIIM Note: maturase Location: 115876-116095 bp Feature: domain Description: GIIM Note: maturase Location: 115876-116095 bp Feature: gene Location: 116391-117278 bp Feature: domain Description: RfbD Location: 116412-117273 bp Feature: domain Description: RfbD Location: 116412 -1172 73 bp Feature: gene Location: 426447-426587 bp Feature: gene Location: 426744-426932 bp Feature: gene Location: 426939-427409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427236-427383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 72 36-42 7383 bp Feature: gene Location: 427522-427797 bp Feature: domain Description: GIIM Note: maturase Location: 427525-427744 bp Feature: domain Description: GIIM Note: maturase Location: 42 752 5-42 7744 bp Feature: gene Location: 428162-428644 bp Feature: domain Description: COG5418 Location: 428174-428579 bp Feature: domain Description: COG5418 Location: 42 8174-42 8579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Glyco_tranf_GTA_type (cl11394), RfbD (COG1091), COG5418 (Predicted secreted protein )

Seq: LN879456.1 Clostridiaceae bacterium mt10 genome assembly Desnusiella massiliensis, scaffold scaffold00013, whole genome shotgun sequence (1398524 bp)
Overview 1 RT 1: 889549-894055 bp Neighborhood of RT #1 [889549, 894183] COG1669 Zn_dep_PLPC RVT-GII GIIM MurNAc-LAA Feature: gene Location: 889549-889959 bp Feature: domain Description: COG1669 Location: 889603-889789 bp Feature: domain Description: COG1669 Location: 889603 -889789 bp Feature: gene Location: 890366-891028 bp Feature: domain Description: Zn_dep_PLPC Location: 890384-890669 bp Feature: domain Description: Zn_dep_PLPC Location: 8903 84-890669 bp Feature: gene Location: 891301-892713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891655-892273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891655-892273 bp Feature: domain Description: GIIM Note: maturase Location: 892327-892555 bp Feature: domain Description: GIIM Note: maturase Location: 8923 27-892555 bp Feature: gene Location: 893205-893450 bp Feature: gene Location: 893542-894183 bp Feature: domain Description: MurNAc-LAA Location: 893548-894055 bp Feature: domain Description: MurNAc-LAA Location: 893 548-894055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1669 (Predicted nucleotidyltransferase ), Zn_dep_PLPC (smart00770), RVT-GII, GIIM (pfam08388), MurNAc-LAA (cl02713)

Seq: LN879457.1 Clostridiaceae bacterium mt10 genome assembly Desnusiella massiliensis, scaffold scaffold00014, whole genome shotgun sequence (1729511 bp)
Overview 1 RT 1: 1094881-1098629 bp Neighborhood of RT #1 [1094881, 1098629] Hpt1 RVT-Retrons Feature: gene Location: 1094881-1095771 bp Feature: domain Description: Hpt1 Location: 1095250-1095568 bp Feature: domain Description: Hpt1 Location: 1095250-1095568 bp Feature: gene Location: 1095807-1096184 bp Feature: gene Location: 1096419-1097432 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1096638-1097190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1096638-1097190 bp Feature: gene Location: 1098308-1098439 bp Feature: gene Location: 1098456-1098629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hpt1 (COG2236), RVT-Retrons