myRT

myRT report for GCA_001403875.1_Paenibacillus_ihumii

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Seq: LN884299.1 Paenibacillus sp. AT5 genome assembly Paenibacillus ihumii, scaffold scaffold00012, whole genome shotgun sequence (4112046 bp)
Overview 1 RT 1: 504680-511026 bp 2 RT 2: 1107888-1116565 bp 3 RT 3: 1302556-1305793 bp 4 RT 4: 2151625-2154815 bp 5 RT 5: 3053064-3056911 bp 6 RT 6: 3369539-3373438 bp 7 RT 7: 3879583-3887755 bp 8 RT 8: 3916304-3919538 bp Neighborhood of RT #1 [504680, 511028] BcsQ RVT-UG13 PBP2_Fbp_like_1 PotA Neighborhood of RT #2 [1107888, 1116565] YesN RVT-GII GIIM PRK15098 PRK15098 CBM6_xylanase-like Neighborhood of RT #3 [1302556, 1305879] RVT-GII GIIM MltE Neighborhood of RT #4 [2151625, 2154928] AcrR RVT-GII GIIM MarR Neighborhood of RT #5 [3053064, 3056913] RVT-GII GIIM PRK14240 Neighborhood of RT #6 [3369539, 3373440] HTH_ARSR COG3860 RVT-GII GIIM YdhF Neighborhood of RT #7 [3879583, 3887787] RVT-GII GIIM Glug Glug Glug Glug Cadherin-like SLH SLH SLH RCC1_2 RCC1_2 RCC1_2 RCC1_2 Cadherin-like CHB_HEX_C_1 CHB_HEX_C_1 FN3 Cadherin-like SLH SLH SLH Neighborhood of RT #8 [3916304, 3919780] PHA02517 RVT-GII GIIM DDE_5 Feature: gene Location: 504680-505396 bp Feature: gene Location: 505916-506755 bp Feature: domain Description: BcsQ Location: 505919-506741 bp Feature: domain Description: BcsQ Location: 50591 9-506741 bp Feature: gene Location: 506858-508504 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 507272-507764 bp Feature: RT Description: RVT-UG1 3 Note: UG1 3 RT Location: 507272-507764 bp Feature: gene Location: 508884-509936 bp Feature: domain Description: PBP2_Fbp_like_1 Location: 508998-509871 bp Feature: domain Description: PBP2_Fbp_like_1 Location: 508998-509871 bp Feature: gene Location: 509967-511028 bp Feature: domain Description: PotA Location: 509979-511026 bp Feature: domain Description: PotA Location: 509979-51 1 026 bp Feature: gene Location: 1107888-1109435 bp Feature: domain Description: YesN Location: 1107891-1109421 bp Feature: domain Description: YesN Location: 1 1 07891 -1 1 09421 bp Feature: gene Location: 1109472-1109792 bp Feature: gene Location: 1110077-1111369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110377-1111010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 0377-1 1 1 1 01 0 bp Feature: domain Description: GIIM Note: maturase Location: 1111139-1111307 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 1 1 39-1 1 1 1 307 bp Feature: gene Location: 1112793-1115633 bp Feature: domain Description: PRK15098 Location: 1113003-1114044 bp Feature: domain Description: PRK1 5098 Location: 1 1 1 3003-1 1 1 4044 bp Feature: domain Description: PRK15098 Location: 1114437-1115214 bp Feature: domain Description: PRK1 5098 Location: 1 1 1 4437-1 1 1 521 4 bp Feature: domain Description: CBM6_xylanase-like Location: 1115280-1115625 bp Feature: domain Description: CBM6_xylanase-like Location: 1 1 1 5280-1 1 1 5625 bp Feature: gene Location: 1116284-1116565 bp Feature: gene Location: 1302556-1303056 bp Feature: gene Location: 1303092-1303355 bp Feature: gene Location: 1303640-1304932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1303940-1304573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 303940-1 304573 bp Feature: domain Description: GIIM Note: maturase Location: 1304720-1304870 bp Feature: domain Description: GIIM Note: maturase Location: 1 304720-1 304870 bp Feature: gene Location: 1304938-1305081 bp Feature: gene Location: 1305130-1305879 bp Feature: domain Description: MltE Location: 1305415-1305793 bp Feature: domain Description: MltE Location: 1 30541 5-1 305793 bp Feature: gene Location: 2151625-2152209 bp Feature: domain Description: AcrR Location: 2151652-2151961 bp Feature: domain Description: AcrR Location: 21 51 652-21 51 961 bp Feature: gene Location: 2152314-2152643 bp Feature: gene Location: 2152928-2154220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2153228-2153861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 53228-21 53861 bp Feature: domain Description: GIIM Note: maturase Location: 2153990-2154158 bp Feature: domain Description: GIIM Note: maturase Location: 21 53990-21 541 58 bp Feature: gene Location: 2154226-2154393 bp Feature: gene Location: 2154386-2154928 bp Feature: domain Description: MarR Location: 2154443-2154815 bp Feature: domain Description: MarR Location: 21 54443-21 5481 5 bp Feature: gene Location: 3053064-3053678 bp Feature: gene Location: 3054071-3054268 bp Feature: gene Location: 3054274-3055566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054574-3055207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054574-3055207 bp Feature: domain Description: GIIM Note: maturase Location: 3055336-3055504 bp Feature: domain Description: GIIM Note: maturase Location: 3055336-3055504 bp Feature: gene Location: 3055851-3056117 bp Feature: gene Location: 3056155-3056913 bp Feature: domain Description: PRK14240 Location: 3056170-3056911 bp Feature: domain Description: PRK1 4240 Location: 30561 70-305691 1 bp Feature: gene Location: 3369539-3369685 bp Feature: gene Location: 3369853-3370479 bp Feature: domain Description: HTH_ARSR Location: 3369913-3370114 bp Feature: domain Description: HTH_ARSR Location: 336991 3-33701 1 4 bp Feature: domain Description: COG3860 Location: 3370195-3370450 bp Feature: domain Description: COG3860 Location: 33701 95-3370450 bp Feature: gene Location: 3370587-3371879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3370887-3371520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3370887-3371 520 bp Feature: domain Description: GIIM Note: maturase Location: 3371649-3371817 bp Feature: domain Description: GIIM Note: maturase Location: 3371 649-3371 81 7 bp Feature: gene Location: 3372164-3372412 bp Feature: gene Location: 3372523-3373440 bp Feature: domain Description: YdhF Location: 3372526-3373438 bp Feature: domain Description: YdhF Location: 3372526-3373438 bp Feature: gene Location: 3879583-3879720 bp Feature: gene Location: 3879825-3879965 bp Feature: gene Location: 3879971-3881263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3880271-3880904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3880271 -3880904 bp Feature: domain Description: GIIM Note: maturase Location: 3881033-3881201 bp Feature: domain Description: GIIM Note: maturase Location: 3881 033-3881 201 bp Feature: gene Location: 3881831-3885187 bp Feature: domain Description: Glug Location: 3882359-3882431 bp Feature: domain Description: Glug Location: 3882359-3882431 bp Feature: domain Description: Glug Location: 3882518-3882608 bp Feature: domain Description: Glug Location: 388251 8-3882608 bp Feature: domain Description: Glug Location: 3882725-3882806 bp Feature: domain Description: Glug Location: 3882725-3882806 bp Feature: domain Description: Glug Location: 3882821-3882905 bp Feature: domain Description: Glug Location: 3882821 -3882905 bp Feature: domain Description: Cadherin-like Location: 3884372-3884606 bp Feature: domain Description: Cadherin-like Location: 3884372-3884606 bp Feature: domain Description: SLH Location: 3884651-3884771 bp Feature: domain Description: SLH Location: 3884651 -3884771 bp Feature: domain Description: SLH Location: 3884834-3884963 bp Feature: domain Description: SLH Location: 3884834-3884963 bp Feature: domain Description: SLH Location: 3885017-3885146 bp Feature: domain Description: SLH Location: 388501 7-38851 46 bp Feature: gene Location: 3885328-3887787 bp Feature: domain Description: RCC1_2 Location: 3885352-3885427 bp Feature: domain Description: RCC1 _2 Location: 3885352-3885427 bp Feature: domain Description: RCC1_2 Location: 3885469-3885556 bp Feature: domain Description: RCC1 _2 Location: 3885469-3885556 bp Feature: domain Description: RCC1_2 Location: 3885586-3885673 bp Feature: domain Description: RCC1 _2 Location: 3885586-3885673 bp Feature: domain Description: RCC1_2 Location: 3885703-3885784 bp Feature: domain Description: RCC1 _2 Location: 3885703-3885784 bp Feature: domain Description: Cadherin-like Location: 3885856-3886090 bp Feature: domain Description: Cadherin-like Location: 3885856-3886090 bp Feature: domain Description: CHB_HEX_C_1 Location: 3886138-3886330 bp Feature: domain Description: CHB_HEX_C_1 Location: 38861 38-3886330 bp Feature: domain Description: CHB_HEX_C_1 Location: 3886390-3886582 bp Feature: domain Description: CHB_HEX_C_1 Location: 3886390-3886582 bp Feature: domain Description: FN3 Location: 3886615-3886885 bp Feature: domain Description: FN3 Location: 388661 5-3886885 bp Feature: domain Description: Cadherin-like Location: 3886999-3887233 bp Feature: domain Description: Cadherin-like Location: 3886999-3887233 bp Feature: domain Description: SLH Location: 3887266-3887386 bp Feature: domain Description: SLH Location: 3887266-3887386 bp Feature: domain Description: SLH Location: 3887440-3887572 bp Feature: domain Description: SLH Location: 3887440-3887572 bp Feature: domain Description: SLH Location: 3887629-3887755 bp Feature: domain Description: SLH Location: 3887629-3887755 bp Feature: gene Location: 3916304-3916654 bp Feature: domain Description: PHA02517 Location: 3916391-3916640 bp Feature: domain Description: PHA0251 7 Location: 391 6391 -391 6640 bp Feature: gene Location: 3916924-3917217 bp Feature: gene Location: 3917422-3918729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3917707-3918346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 7707-391 8346 bp Feature: domain Description: GIIM Note: maturase Location: 3918424-3918646 bp Feature: domain Description: GIIM Note: maturase Location: 391 8424-391 8646 bp Feature: gene Location: 3918760-3918978 bp Feature: gene Location: 3919232-3919780 bp Feature: domain Description: DDE_5 Location: 3919352-3919538 bp Feature: domain Description: DDE_5 Location: 391 9352-391 9538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), RVT-UG13, PBP2_Fbp_like_1 (cd13544), PotA (COG3842), YesN (COG4753), RVT-GII, GIIM (pfam08388), PRK15098 (beta-glucosidase BglX), CBM6_xylanase-like (cd04084), MltE (COG0741)
AcrR (COG1309), MarR (pfam01047), PRK14240 (phosphate transporter ATP-binding protein; Provisional), HTH_ARSR (smart00418), COG3860 (Uncharacterized protein, DUF2087 family ), YdhF (COG4989), Glug (pfam07581), Cadherin-like (pfam12733), SLH (pfam00395), RCC1_2 (pfam13540)
CHB_HEX_C_1 (pfam13290), FN3 (smart00060), PHA02517 (putative transposase OrfB; Reviewed), DDE_5 (pfam13546)