myRT

myRT report for GCA_001404015.1_6731_2_12

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Seq: CHRM01000011.1 Streptococcus pneumoniae genome assembly 6731_2#12, scaffold ERS020530SCcontig000011, whole genome shotgun sequence (53203 bp)
Overview 1 RT 1: 24030-33287 bp Neighborhood of RT #1 [24030, 33469] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 24030-24620 bp Feature: domain Description: COG5340 Location: 24033-24465 bp Feature: domain Description: COG5340 Location: 24033-24465 bp Feature: gene Location: 24617-25462 bp Feature: domain Description: AbiEii Location: 24716-25415 bp Feature: domain Description: AbiEii Location: 2471 6-2541 5 bp Feature: gene Location: 25812-27734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26139-26874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 39-26874 bp Feature: domain Description: cas_Csn1 Location: 27285-27564 bp Feature: domain Description: cas_Csn1 Location: 27285-27564 bp Feature: gene Location: 28443-31121 bp Feature: domain Description: Peptidase_M23 Location: 29889-30093 bp Feature: domain Description: Peptidase_M23 Location: 29889-30093 bp Feature: domain Description: Phage_lysozyme2 Location: 30246-30753 bp Feature: domain Description: Phage_lysozyme2 Location: 30246-30753 bp Feature: domain Description: COG3942 Location: 30873-31104 bp Feature: domain Description: COG3942 Location: 30873-31 1 04 bp Feature: gene Location: 31118-33469 bp Feature: domain Description: TraC-F-type Location: 31904-33287 bp Feature: domain Description: TraC-F-type Location: 31 904-33287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)