myRT

myRT report for GCA_001404235.1_6731_2_19

Download annotations/find similar RTs

Seq: CRCN01000024.1 Streptococcus pneumoniae genome assembly 6731_2#19, scaffold ERS020537SCcontig000024, whole genome shotgun sequence (15513 bp)
Overview 1 RT 1: 987-10244 bp Neighborhood of RT #1 [987, 10426] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 987-1577 bp Feature: domain Description: COG5340 Location: 990-1422 bp Feature: domain Description: COG5340 Location: 990-1 422 bp Feature: gene Location: 1574-2419 bp Feature: domain Description: AbiEii Location: 1673-2372 bp Feature: domain Description: AbiEii Location: 1 673-2372 bp Feature: gene Location: 2769-4691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096-3831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3096-3831 bp Feature: domain Description: cas_Csn1 Location: 4242-4521 bp Feature: domain Description: cas_Csn1 Location: 4242-4521 bp Feature: gene Location: 5400-8078 bp Feature: domain Description: Peptidase_M23 Location: 6846-7050 bp Feature: domain Description: Peptidase_M23 Location: 6846-7050 bp Feature: domain Description: Phage_lysozyme2 Location: 7203-7710 bp Feature: domain Description: Phage_lysozyme2 Location: 7203-771 0 bp Feature: domain Description: COG3942 Location: 7830-8061 bp Feature: domain Description: COG3942 Location: 7830-8061 bp Feature: gene Location: 8075-10426 bp Feature: domain Description: TraC-F-type Location: 8861-10244 bp Feature: domain Description: TraC-F-type Location: 8861 -1 0244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CRCN01000118.1 Streptococcus pneumoniae genome assembly 6731_2#19, scaffold ERS020537SCcontig000118, whole genome shotgun sequence (5857 bp)
Overview 1 RT 1: 1227-5241 bp Neighborhood of RT #1 [1227, 5333] AceF lipoamide_DH lipoyltrans RVT-GII GIIM Feature: gene Location: 1227-2930 bp Feature: domain Description: AceF Location: 1230-1527 bp Feature: domain Description: AceF Location: 12 30-152 7 bp Feature: domain Description: lipoamide_DH Location: 1563-2913 bp Feature: domain Description: lipoamide_DH Location: 1563-2 913 bp Feature: gene Location: 3001-3990 bp Feature: domain Description: lipoyltrans Location: 3013-3961 bp Feature: domain Description: lipoyltrans Location: 3013-3961 bp Feature: gene Location: 4155-5333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4359-4974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4359-4974 bp Feature: domain Description: GIIM Note: maturase Location: 5028-5241 bp Feature: domain Description: GIIM Note: maturase Location: 502 8-52 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AceF (COG0508), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), RVT-GII, GIIM (pfam08388)