myRT

myRT report for GCA_001404335.1_13470_2_95

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Seq: CYZU01000013.1 [Eubacterium] contortum strain 2789STDY5834876 genome assembly, contig: SCcontig000013, whole genome shotgun sequence (110067 bp)
Overview 1 RT 1: 20804-25249 bp Neighborhood of RT #1 [20804, 25506] CaiD benzyl_alcohol_DH RVT-GII GIIM DHAK_reg Feature: gene Location: 20804-21574 bp Feature: domain Description: CaiD Location: 20810-21569 bp Feature: domain Description: CaiD Location: 2081 0-21 569 bp Feature: gene Location: 21611-22732 bp Feature: domain Description: benzyl_alcohol_DH Location: 21623-22715 bp Feature: domain Description: benzyl_alcohol_DH Location: 21 623-2271 5 bp Feature: gene Location: 23020-24312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23221-23839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23221 -23839 bp Feature: domain Description: GIIM Note: maturase Location: 23893-24097 bp Feature: domain Description: GIIM Note: maturase Location: 23893-24097 bp Feature: gene Location: 24419-24541 bp Feature: gene Location: 24892-25506 bp Feature: domain Description: DHAK_reg Location: 24910-25249 bp Feature: domain Description: DHAK_reg Location: 2491 0-25249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CaiD (COG1024), benzyl_alcohol_DH (cd08278), RVT-GII, GIIM (pfam08388), DHAK_reg (TIGR02366)

Seq: CYZU01000002.1 [Eubacterium] contortum strain 2789STDY5834876 genome assembly, contig: SCcontig000002, whole genome shotgun sequence (196346 bp)
Overview 1 RT 1: 30191-33273 bp Neighborhood of RT #1 [30191, 33755] RVT-DGRs Avd_like FGE-sulfatase Feature: gene Location: 30191-30520 bp Feature: gene Location: 30537-30692 bp Feature: gene Location: 30643-31806 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30847-31579 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30847-31579 bp Feature: gene Location: 32180-32629 bp Feature: domain Description: Avd_like Location: 32246-32552 bp Feature: domain Description: Avd_like Location: 32 2 46-32 552 bp Feature: gene Location: 32685-33755 bp Feature: domain Description: FGE-sulfatase Location: 32931-33273 bp Feature: domain Description: FGE-sulfatase Location: 32 931-332 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), FGE-sulfatase (pfam03781)

Seq: CYZU01000026.1 [Eubacterium] contortum strain 2789STDY5834876 genome assembly, contig: SCcontig000026, whole genome shotgun sequence (72615 bp)
Overview 1 RT 1: 100-2718 bp Neighborhood of RT #1 [100, 2723] RVT-GII GIIM UgpE Feature: gene Location: 100-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-1045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 55-1045 bp Feature: domain Description: GIIM Note: maturase Location: 1126-1330 bp Feature: domain Description: GIIM Note: maturase Location: 1126-13 3 0 bp Feature: gene Location: 1355-1525 bp Feature: gene Location: 1899-2723 bp Feature: domain Description: UgpE Location: 1914-2718 bp Feature: domain Description: UgpE Location: 1914-2718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UgpE (COG0395)

Seq: CYZU01000047.1 [Eubacterium] contortum strain 2789STDY5834876 genome assembly, contig: SCcontig000047, whole genome shotgun sequence (43167 bp)
Overview 1 RT 1: 12759-22729 bp Neighborhood of RT #1 [12759, 23346] ArdC LPD26 LPD16 LPD25 YodL DUF4316 TTRAP RVT-GII GIIM STKc_PknB_like RVT-GII GIIM Cys_rich_VLP Relaxase Feature: gene Location: 12759-16259 bp Feature: domain Description: ArdC Location: 13239-13941 bp Feature: domain Description: ArdC Location: 13239-1394 1 bp Feature: domain Description: LPD26 Location: 13986-14172 bp Feature: domain Description: LPD26 Location: 13986-14 172 bp Feature: domain Description: LPD16 Location: 14184-14421 bp Feature: domain Description: LPD16 Location: 14 184 -14 4 21 bp Feature: domain Description: LPD25 Location: 14763-15048 bp Feature: domain Description: LPD25 Location: 14 763-1504 8 bp Feature: domain Description: YodL Location: 15459-15759 bp Feature: domain Description: YodL Location: 154 59-15759 bp Feature: domain Description: DUF4316 Location: 15966-16101 bp Feature: domain Description: DUF4 316 Location: 15966-16101 bp Feature: gene Location: 16263-16463 bp Feature: domain Description: TTRAP Location: 16272-16446 bp Feature: domain Description: TTRAP Location: 16272-164 4 6 bp Feature: gene Location: 16992-18272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17202-17817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17202-17817 bp Feature: domain Description: GIIM Note: maturase Location: 17880-18099 bp Feature: domain Description: GIIM Note: maturase Location: 17880-18099 bp Feature: gene Location: 18357-19523 bp Feature: domain Description: STKc_PknB_like Location: 18828-19446 bp Feature: domain Description: STKc_PknB_like Location: 18828-194 4 6 bp Feature: gene Location: 20077-21468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20392-21019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20392-21019 bp Feature: domain Description: GIIM Note: maturase Location: 21073-21289 bp Feature: domain Description: GIIM Note: maturase Location: 21073-21289 bp Feature: gene Location: 21644-22015 bp Feature: domain Description: Cys_rich_VLP Location: 21671-21827 bp Feature: domain Description: Cys_rich_VLP Location: 21671-21827 bp Feature: gene Location: 22012-23346 bp Feature: domain Description: Relaxase Location: 22042-22729 bp Feature: domain Description: Relaxase Location: 2204 2-22729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), LPD26 (pfam18842), LPD16 (pfam18830), LPD25 (pfam18840), YodL (pfam14191), DUF4316 (pfam14195), TTRAP (pfam14203), RVT-GII, GIIM (pfam08388), STKc_PknB_like (cd14014)
Cys_rich_VLP (pfam14194), Relaxase (pfam03432)

Seq: CYZU01000015.1 [Eubacterium] contortum strain 2789STDY5834876 genome assembly, contig: SCcontig000015, whole genome shotgun sequence (102029 bp)
Overview 1 RT 1: 43720-48803 bp Neighborhood of RT #1 [43720, 48808] LexA_DNA_bind RVT_N RVT-GII GIIM HipB COG2932 XRE Feature: gene Location: 43720-43959 bp Feature: gene Location: 43972-44184 bp Feature: domain Description: LexA_DNA_bind Location: 43981-44170 bp Feature: domain Description: LexA_DNA_bind Location: 43981-44170 bp Feature: gene Location: 45524-46993 bp Feature: RT Description: RVT_N Location: 45569-45806 bp Feature: RT Description: RVT_N Location: 45 5 69-45 806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45857-46505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 85 7-465 05 bp Feature: domain Description: GIIM Note: maturase Location: 46556-46790 bp Feature: domain Description: GIIM Note: maturase Location: 465 5 6-46790 bp Feature: gene Location: 47820-48551 bp Feature: domain Description: HipB Location: 47832-48048 bp Feature: domain Description: HipB Location: 47832-48048 bp Feature: domain Description: COG2932 Location: 48204-48516 bp Feature: domain Description: COG2932 Location: 48204-485 16 bp Feature: gene Location: 48608-48808 bp Feature: domain Description: XRE Location: 48620-48803 bp Feature: domain Description: XRE Location: 48620-48803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LexA_DNA_bind (pfam01726), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), XRE (COG1476)